chr4 : 96,304,839 – 96,305,453
614 bp 85 TFs 0 linked genes
This 614 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:96,299,839 – 96,310,453
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
AR 13 datasets
ChIP VCaP GSE148358.AR.VCaP 338 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 236 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 270 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 216 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 151 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 182 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 169 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 163 bp overlap
ChIP VCaP_Veh GSE125245.AR.VCaP_Veh 181 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 221 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 251 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 133 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 64 bp overlap
ATF3 2 datasets
ChIP liver ENCFF375GID 417 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 254 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 364 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 348 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 146 bp overlap
ChIP VCaP GSE148358.BRD4.VCaP 216 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 190 bp overlap
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 260 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 93 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 176 bp overlap
CRX 1 dataset
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 252 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 302 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 310 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 303 bp overlap
ESR1 12 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 336 bp overlap
ChIP MCF-7 GSE60270.ESR1.MCF-7 115 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 297 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 166 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 283 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 336 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 249 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 214 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 166 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 431 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 272 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 336 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 299 bp overlap
FOXA1 9 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 226 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 135 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 247 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 290 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 309 bp overlap
ChIP liver ENCFF749ERP 345 bp overlap
ChIP liver ERP002306.FOXA1.liver 226 bp overlap
ChIP liver ENCSR735KEY.FOXA1.liver 149 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 362 bp overlap
FOXA2 8 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 280 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 298 bp overlap
ChIP DE DE-FOXA2-1 497 bp overlap
ChIP DE DE-FOXA2-2 484 bp overlap
ChIP liver ENCFF877SFI 345 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 202 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 148 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 349 bp overlap
FOXO1::FLI1 4 datasets
Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA2 12 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 427 bp overlap
ChIP SK-N-SH ENCFF764OZD 382 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 212 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 358 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 330 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 311 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 220 bp overlap
GATA3 12 datasets
ChIP BE2C GSE65664.GATA3.BE2C 198 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 311 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 289 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 271 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 442 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 322 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 352 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 288 bp overlap
ChIP SH-SY5Y ENCFF475HYF 416 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 442 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 284 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 13 datasets
ChIP A-549 GSE85002.GATA4.A-549 201 bp overlap
ChIP DE DE-GATA4-1 574 bp overlap
ChIP DE DE-GATA4-2 614 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 396 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 420 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 514 bp overlap
ChIP foregut GSE117136.GATA4.foregut 577 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 522 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 506 bp overlap
GATA5 4 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 24 datasets
ChIP AGS GSE51705.GATA6.AGS 409 bp overlap
ChIP AGS GSE51936.GATA6.AGS 154 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 388 bp overlap
ChIP DE DE-GATA6-1 614 bp overlap
ChIP DE DE-GATA6-2 614 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 316 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 498 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 309 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 614 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 614 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 604 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 390 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 274 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 102 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 459 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 614 bp overlap
ChIP foregut GSE117136.GATA6.foregut 614 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 369 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 477 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 514 bp overlap
Gata3 4 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 310 bp overlap
HIF1A 1 dataset
ChIP NCI-H1299 GSE76770.HIF1A.NCI-H1299 144 bp overlap
HNF4A 4 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 208 bp overlap
ChIP liver ENCFF354NRH 246 bp overlap
ChIP liver ENCFF449HPV 407 bp overlap
ChIP liver ERP002306.HNF4A.liver 213 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 228 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 391 bp overlap
ChIP SK-N-SH ENCFF285GEQ 392 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 410 bp overlap
JUND 1 dataset
ChIP liver ENCSR837GTK.JUND.liver 173 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 348 bp overlap
MAX 2 datasets
ChIP liver ENCFF584QGB 435 bp overlap
ChIP liver ENCSR521IID.MAX.liver 222 bp overlap
MED1 2 datasets
ChIP VCaP GSE148358.MED1.VCaP 153 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 175 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 338 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 271 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 224 bp overlap
MSANTD3 4 datasets
Motif DE_36h DE_36h-MSANTD3_MA1523.2 7 bp overlap
Motif DE_48h DE_48h-MSANTD3_MA1523.2 7 bp overlap
Motif DE_60h DE_60h-MSANTD3_MA1523.2 7 bp overlap
Motif DE_72h DE_72h-MSANTD3_MA1523.2 7 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 288 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 187 bp overlap
NFIA 1 dataset
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIC 2 datasets
Motif DE_48h DE_48h-NFIC_MA0161.3 7 bp overlap
Motif DE_60h DE_60h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
NKX2-2 4 datasets
Motif DE_36h DE_36h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 292 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR338MMB.NR2F2.liver 277 bp overlap
NR3C1 1 dataset
Motif DE_60h DE_60h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif DE_60h DE_60h-NR3C2_MA0727.2 15 bp overlap
Nr2e1 1 dataset
Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 221 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 366 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 377 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 86 bp overlap
PPARG 1 dataset
Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 203 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 239 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 372 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 157 bp overlap
Rarg 4 datasets
Motif DE_36h DE_36h-Rarg_MA0860.1 17 bp overlap
Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap
Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap
Motif DE_72h DE_72h-Rarg_MA0860.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 476 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 227 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 403 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 279 bp overlap
SOX14 1 dataset
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 276 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 274 bp overlap
SOX18 1 dataset
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 237 bp overlap
SRY 1 dataset
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 318 bp overlap
SUZ12 1 dataset
ChIP ProEs GSE59087.SUZ12.ProEs 171 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Spz1 4 datasets
Motif DE_36h DE_36h-Spz1_MA0111.1 11 bp overlap
Motif DE_48h DE_48h-Spz1_MA0111.1 11 bp overlap
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 256 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 266 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 437 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 195 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 220 bp overlap
TRPS1 5 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ChIP MCF-7 GSE133072.TRPS1.MCF-7 188 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 177 bp overlap
Tfcp2l1 4 datasets
Motif DE_36h DE_36h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_48h DE_48h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_60h DE_60h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
YY1AP1 2 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 246 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 290 bp overlap
ZBTB33 2 datasets
ChIP liver ENCFF592BJA 521 bp overlap
ChIP liver ENCSR516HUP.ZBTB33.liver 298 bp overlap
ZNF133 1 dataset
ChIP HEK293T GSE78099.ZNF133.HEK293T 66 bp overlap
ZNF766 4 datasets
Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
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