chr4 : 42,570,276 42,571,247
971 bp 85 TFs 0 linked genes
This 971 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:42,565,276 – 42,576,247
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
AR 39 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 246 bp overlap
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 271 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 257 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 236 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 257 bp overlap
ChIP LNCaP GSE117430.AR.LNCaP 230 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP LNCaP-abl_DMSO GSE80238.AR.LNCaP-abl_DMSO 223 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 389 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 239 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 312 bp overlap
ChIP LNCaP_DHT_GSK4H GSE114266.AR.LNCaP_DHT_GSK4H 180 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 270 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 213 bp overlap
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 191 bp overlap
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 248 bp overlap
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 186 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 179 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 222 bp overlap
ChIP LNCaP_Talen_Veh GSE89938.AR.LNCaP_Talen_Veh 166 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 245 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 249 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 254 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 287 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 361 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 271 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 250 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 213 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 170 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 170 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 145 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 319 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 210 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 156 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 207 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 90 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 80 bp overlap
ChIP prostate-cancer_shCXXC5 GSE136128.AR.prostate-cancer_shCXXC5 166 bp overlap
ChIP prostate_P27_T GSE130408.AR.prostate_P27_T 203 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 152 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 215 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 236 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 151 bp overlap
BRD4 5 datasets
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-075 297 bp overlap
ChIP VCaP GSE148358.BRD4.VCaP 108 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 194 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 192 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 90 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 130 bp overlap
CREB1 2 datasets
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 319 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 230 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 192 bp overlap
CTCF 8 datasets
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 133 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 420 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 485 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 197 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 238 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 442 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF604JAV 439 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 167 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 366 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 265 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 184 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 293 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 267 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 196 bp overlap
ChIP T-47D ENCSR000BLM.EP300.T-47D 153 bp overlap
ERG 3 datasets
ChIP VCaP GSE49091.ERG.VCaP 215 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 206 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 187 bp overlap
ESR1 3 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 273 bp overlap
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 274 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 315 bp overlap
ETV6 1 dataset
ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 245 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 98 bp overlap
FOXA1 19 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 175 bp overlap
Motif DE_60h DE_60h-FOXA1_MA0148.5 8 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 158 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 248 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 185 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 186 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 184 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 250 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 128 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 159 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 186 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 195 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 174 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 93 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 188 bp overlap
ChIP prostate_P29 GSE130408.FOXA1.prostate_P29 233 bp overlap
ChIP prostate_P29_T GSE130408.FOXA1.prostate_P29_T 205 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 225 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 297 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 292 bp overlap
ChIP DE DE-FOXA2-2 403 bp overlap
FOXB1 1 dataset
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXF2 1 dataset
Motif DE_60h DE_60h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
FOXP3 1 dataset
Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_60h DE_60h-Foxj2_MA0614.1 8 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 110 bp overlap
GATA2 2 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 221 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 189 bp overlap
GATA3 2 datasets
ChIP BE2C GSE65664.GATA3.BE2C 278 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 207 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 447 bp overlap
ChIP DE DE-GATA4-2 427 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 314 bp overlap
ChIP foregut GSE117136.GATA4.foregut 284 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 297 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 393 bp overlap
ChIP DE DE-GATA6-2 454 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 296 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 388 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 553 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 399 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 274 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 418 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 291 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 182 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap
HOXB13 11 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 61 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 57 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 109 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 273 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 154 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 204 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 282 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 185 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 223 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 261 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 228 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 311 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 230 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 183 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 320 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 208 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 181 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 176 bp overlap
ChIP RH4 GSE83726.MED1.RH4 216 bp overlap
MYC 1 dataset
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 229 bp overlap
NANOG 2 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 200 bp overlap
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 232 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 302 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 258 bp overlap
OLIG2 2 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 255 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 336 bp overlap
POLR2A 3 datasets
ChIP prostate gland ENCFF881OMH 222 bp overlap
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 87 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 390 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 218 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 224 bp overlap
RBPJ 1 dataset
ChIP HCC1599 GSE116871.RBPJ.HCC1599 257 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 137 bp overlap
RELA 3 datasets
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 175 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 163 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 193 bp overlap
RUNX1 1 dataset
ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 197 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 308 bp overlap
SMARCA4 2 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 209 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 103 bp overlap
SMARCC1 1 dataset
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 122 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 374 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 222 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 727 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 185 bp overlap
STAT3 2 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 268 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 276 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 178 bp overlap
ChIP BE2C GSE84389.TEAD4.BE2C 268 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 178 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 268 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 243 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 186 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 236 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 213 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 210 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 413 bp overlap
ZFP42 1 dataset
Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap
ZNF324 1 dataset
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
ZNF35 1 dataset
Motif DE_60h DE_60h-ZNF35_MA2333.1 7 bp overlap