chr4 : 13,534,108 13,535,093
985 bp 79 TFs 2 linked genes
This 985 bp open chromatin element is linked to LINC01097 and NKX3-2 and is bound by 79 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC01097 2.7 kb Proximal Proximity
NKX3-2 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:13,529,108 – 13,540,093
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 198 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 402 bp overlap
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 198 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 295 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 67 bp overlap
BRD4 3 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 233 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 237 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 666 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 207 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 577 bp overlap
ChIP H1 ENCFF095JHA 518 bp overlap
CEBPA 3 datasets
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 355 bp overlap
CEBPB 8 datasets
Motif DE_12h DE_12h-CEBPB_MA0466.4 10 bp overlap
Motif ES_0h ES_0h-CEBPB_MA0466.4 10 bp overlap
ChIP H1 ENCFF871PTR 85 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 172 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 140 bp overlap
ChIP K562 ENCFF194QGF 321 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 468 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 254 bp overlap
CEBPD 2 datasets
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CEBPG 2 datasets
Motif DE_12h DE_12h-CEBPG_MA0838.1 10 bp overlap
Motif ES_0h ES_0h-CEBPG_MA0838.1 10 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 272 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 773 bp overlap
CTCF 14 datasets
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 189 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 208 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 132 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 257 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 246 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 131 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 188 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 120 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 396 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 98 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF031ISE 265 bp overlap
ChIP BLaER1 ENCFF335XTP 288 bp overlap
ChIP BLaER1 ENCFF364PUR 259 bp overlap
ChIP BLaER1 ENCFF460KDD 111 bp overlap
ChIP BLaER1 ENCFF896HSY 297 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 119 bp overlap
EGR1 3 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 319 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 123 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 207 bp overlap
ETS1 4 datasets
ChIP 786-O GSE86092.ETS1.786-O 207 bp overlap
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 228 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 144 bp overlap
EZH2 41 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 63 bp overlap
ChIP GM23248 ENCFF404ZHM 597 bp overlap
ChIP GM23248 ENCFF404ZHM 597 bp overlap
ChIP GM23248 ENCFF506FWX 59 bp overlap
ChIP GM23248 ENCFF506FWX 287 bp overlap
ChIP GM23338 ENCFF613YON 985 bp overlap
ChIP GM23338 ENCFF886DXX 365 bp overlap
ChIP H1 ENCFF232NZA 985 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 985 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 285 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 360 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 173 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 177 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 362 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 245 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 57 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 134 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 213 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 435 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 244 bp overlap
ChIP T98G GSE112240.EZH2.T98G 249 bp overlap
ChIP astrocyte ENCFF365JTP 614 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 160 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 561 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 201 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 732 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 226 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 123 bp overlap
ChIP fibroblast of lung ENCFF479BAW 605 bp overlap
ChIP fibroblast of lung ENCFF479BAW 605 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 884 bp overlap
ChIP hESC GSE113817.EZH2.hESC 219 bp overlap
ChIP hepatocyte ENCFF118DKH 313 bp overlap
ChIP hepatocyte ENCFF552DZB 298 bp overlap
ChIP keratinocyte ENCFF070STK 178 bp overlap
ChIP keratinocyte ENCFF070STK 383 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 136 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 407 bp overlap
ChIP neural progenitor cell ENCFF018MKA 985 bp overlap
ChIP neural progenitor cell ENCFF472NFV 985 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 295 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 210 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 191 bp overlap
HNRNPL 4 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 280 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 276 bp overlap
ChIP HepG2 ENCFF671UYF 409 bp overlap
ChIP HepG2 ENCFF684GAM 407 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JARID2 1 dataset
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 292 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 249 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 216 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF6 1 dataset
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 535 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 189 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 194 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA1538.1 15 bp overlap
NR2F6 1 dataset
Motif ES_0h ES_0h-NR2F6_MA1539.1 15 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 307 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 310 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 290 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 716 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 641 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 127 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 263 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 232 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 228 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 252 bp overlap
ChIP H1 ENCFF239FFS 428 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 771 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 117 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF042ZSL 393 bp overlap
ChIP H1 ENCFF042ZSL 521 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 209 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 348 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 269 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 322 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 209 bp overlap
SUZ12 7 datasets
ChIP H1 ENCFF507HGF 236 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 985 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 118 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 164 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 53 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 985 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0810.2 11 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 985 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 335 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 285 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
YY1 2 datasets
ChIP ALL GSE145549.YY1.ALL 241 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 274 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 166 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 285 bp overlap
ChIP K562 ENCFF875HLX 234 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF524 2 datasets
Motif DE_12h DE_12h-ZNF524_MA2096.1 9 bp overlap
Motif ES_0h ES_0h-ZNF524_MA2096.1 9 bp overlap
ZNF76 2 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap