chr3 : 193,657,509 – 193,658,160
651 bp 104 TFs 0 linked genes
This 651 bp open chromatin element has no linked target genes and is bound by 104 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:193,652,509 – 193,663,160
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 404 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 150 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 222 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 146 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BACH1 1 dataset
ChIP K562 ENCFF419VIM 141 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BIP.BCL11A.WA01 140 bp overlap
BRD4 2 datasets
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 296 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 282 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 215 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 224 bp overlap
CREB3 1 dataset
ChIP K-562 ENCSR093FKD.CREB3.K-562 298 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 219 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 150 bp overlap
ERF::SREBF2 1 dataset
Motif DE_12h DE_12h-ERFSREBF2_MA1939.2 16 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 437 bp overlap
ChIP WTC11 ENCFF812SCD 331 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 634 bp overlap
ChIP DE DE-FOXA2-2 619 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXK1 2 datasets
ChIP WTC11 ENCFF875IGU 391 bp overlap
ChIP WTC11 ENCFF875IGU 339 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 334 bp overlap
GATA1::TAL1 1 dataset
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 575 bp overlap
ChIP DE DE-GATA4-2 462 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 496 bp overlap
ChIP DE DE-GATA6-2 419 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 542 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 559 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 576 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 475 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 555 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 489 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 124 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 187 bp overlap
HNF1A 1 dataset
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
Hmx1 3 datasets
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx2 3 datasets
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
Motif ES_0h ES_0h-Hmx2_MA0897.2 15 bp overlap
IRF1 1 dataset
ChIP K562 ENCFF277KTJ 82 bp overlap
ISL2 3 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 338 bp overlap
ChIP K562 ENCFF128TYE 461 bp overlap
KLF4 2 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 323 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 422 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MNT 1 dataset
ChIP K562 ENCFF342DNS 213 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 209 bp overlap
NANOG 12 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 214 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 602 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 484 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 230 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 595 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 490 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 231 bp overlap
ChIP hESC GSE18292.NANOG.hESC 141 bp overlap
ChIP hESC GSE20650.NANOG.hESC 242 bp overlap
ChIP hESC GSE18292.NANOG.hESC 221 bp overlap
NKX2-3 3 datasets
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-3_MA0672.2 8 bp overlap
NKX2-8 3 datasets
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF998LHF 371 bp overlap
Nkx3-2 3 datasets
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
Motif ES_0h ES_0h-Nkx3-2_MA0122.4 10 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PHOX2B 3 datasets
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 16 datasets
ChIP BG03 GSE21614.POU5F1.BG03 183 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 495 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 539 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 304 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 537 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 215 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 295 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 277 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 196 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 260 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 476 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 472 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 212 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 219 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 321 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 3 datasets
ChIP K-562 ENCSR772EEN.RELA.K-562 242 bp overlap
ChIP K562 ENCFF892SPR 351 bp overlap
ChIP K562 ENCFF892SPR 465 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 61 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 149 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 329 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 535 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 350 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 406 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 294 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 368 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 257 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 393 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 470 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 370 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 430 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 371 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 413 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 435 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 295 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 361 bp overlap
SOX2 3 datasets
ChIP hESC GSE69479.SOX2.hESC 221 bp overlap
ChIP hESC GSE18292.SOX2.hESC 201 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 409 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 212 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 216 bp overlap
TAF9B 1 dataset
ChIP K562 ENCFF121ZIF 69 bp overlap
TBX5 2 datasets
ChIP G296S GSE85628.TBX5.G296S 335 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 342 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 175 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 314 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 238 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 236 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 458 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 281 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP91 1 dataset
ChIP K562 ENCFF501CDP 121 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 473 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 76 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 65 bp overlap
ZNF644 2 datasets
ChIP K562 ENCFF290PDB 60 bp overlap
ChIP K562 ENCFF290PDB 344 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Zfp335 3 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 3 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 3 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 3 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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