chr1 : 63,783,027 63,783,543
516 bp 65 TFs 4 linked genes
This 516 bp open chromatin element is linked to 4 target genes and is bound by 65 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ROR1 9.0 kb Proximal Proximity
PGM1 189.8 kb Distal Multiome
EFCAB7 259.7 kb Distal Multiome
ITGB3BP 260.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:63,778,027 – 63,788,543
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 516 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 468 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 284 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 335 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 423 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 79 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 441 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 301 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 228 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 416 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 173 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 223 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 344 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 329 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 215 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 230 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
IRF1 1 dataset
ChIP WTC11 ENCFF506LYD 377 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 401 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 436 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 435 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 107 bp overlap
KLF4 1 dataset
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 318 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 200 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 267 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 516 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 444 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 260 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 516 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 516 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 420 bp overlap
ChIP hESC GSE20650.NANOG.hESC 294 bp overlap
ChIP hESC GSE18292.NANOG.hESC 252 bp overlap
NIPBL 4 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 284 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 222 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 299 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 312 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 318 bp overlap
ChIP GM23338 ENCFF450WCS 487 bp overlap
ChIP H1 ENCFF566JSR 154 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 516 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 416 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 516 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 147 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 216 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 290 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 223 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 478 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 260 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 217 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 173 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 210 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 468 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 499 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 267 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 139 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 191 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 244 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 288 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 370 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 302 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 281 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 295 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 166 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 231 bp overlap
SMARCA4 4 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 117 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 267 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 505 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 436 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 515 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 423 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 277 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 452 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 437 bp overlap
SOX2 3 datasets
ChIP H9 GSE46837.SOX2.H9 205 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 322 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 342 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 349 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 311 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 281 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 312 bp overlap
ChIP hESC GSE122298.TBP.hESC 246 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 144 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 312 bp overlap
TBX5 1 dataset
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 156 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 243 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 150 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 427 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 338 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 357 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 187 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 471 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 126 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 394 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 232 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 449 bp overlap
ZNF211 1 dataset
Motif ES_0h ES_0h-ZNF211_MA1974.2 10 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF281 2 datasets
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ChIP WTC11 ENCFF551GAV 377 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 310 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 228 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 269 bp overlap
ZNF528 1 dataset
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 60 bp overlap