chr3 : 123,169,519 123,169,980
461 bp 64 TFs 4 linked genes
This 461 bp open chromatin element is linked to 4 target genes and is bound by 64 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SEC22A 32.2 kb Distal Multiome
PDIA5 102.7 kb Distal Multiome
SEMA5B 142.0 kb Distal Multiome
ADCY5 278.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:123,164,519 – 123,174,980
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP GSE80256.AR.LNCaP 349 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 345 bp overlap
ChIP VCaP GSE148358.AR.VCaP 137 bp overlap
BRD2 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 247 bp overlap
BRD4 4 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 254 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 248 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 327 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 311 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 248 bp overlap
CTCF 18 datasets
ChIP A-549 ENCSR000DNA.CTCF.A-549 161 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 193 bp overlap
ChIP A549 ENCFF182TCQ 217 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 244 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 87 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 266 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 57 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 278 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 265 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 245 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 179 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 228 bp overlap
ChIP endodermal cell ENCFF471YCZ 374 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 290 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 178 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 247 bp overlap
ChIP islet ERP004003.CTCF.islet 173 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 188 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 235 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
ESR1 6 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 238 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 125 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 301 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 94 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 334 bp overlap
FOSL2 1 dataset
ChIP A-549 ENCSR000BQO.FOSL2.A-549 152 bp overlap
FOXA1 8 datasets
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 51 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 120 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 81 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 93 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 107 bp overlap
ChIP liver ENCFF537QZV 106 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 54 bp overlap
ChIP liver ERP002306.FOXA1.liver 94 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 461 bp overlap
ChIP DE DE-FOXA2-2 300 bp overlap
ChIP DE DE-FOXA2-2 64 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 257 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 97 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 142 bp overlap
ChIP DE DE-GATA4-1 271 bp overlap
ChIP DE DE-GATA4-2 325 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 247 bp overlap
ChIP DE DE-GATA6-2 406 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 216 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 289 bp overlap
HNF1A 3 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 226 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 71 bp overlap
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 90 bp overlap
HNF1B 3 datasets
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 200 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 385 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 195 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 311 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 203 bp overlap
Hnf1A 1 dataset
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 363 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 254 bp overlap
JUND 2 datasets
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 96 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 190 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 160 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 274 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 295 bp overlap
NFKBIA 1 dataset
ChIP dermal GSE30082.NFKBIA.dermal 385 bp overlap
NR2C1 1 dataset
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 281 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 131 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 248 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 197 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 139 bp overlap
RAD21 1 dataset
ChIP liver ENCFF522JHE 244 bp overlap
RORA 1 dataset
Motif DE_60h DE_60h-RORA_MA0071.1 10 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 272 bp overlap
SMAD2 1 dataset
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 412 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 242 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 232 bp overlap
SMARCA4 8 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 401 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 461 bp overlap
ChIP A-549_AG15687 GSE132290.SMARCA4.A-549_AG15687 203 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 336 bp overlap
ChIP A-549_AG15690 GSE132290.SMARCA4.A-549_AG15690 259 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 72 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 128 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 82 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 443 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 186 bp overlap
SP1 3 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 174 bp overlap
ChIP liver ENCFF597LFJ 227 bp overlap
ChIP liver ENCFF597LFJ 453 bp overlap
SP2 1 dataset
Motif DE_60h DE_60h-SP2_MA0516.3 9 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 268 bp overlap
TFAP2A 1 dataset
Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_60h DE_60h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif DE_60h DE_60h-TFAP2E_MA1569.2 9 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1575.2 17 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 307 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 184 bp overlap
ZNF770 1 dataset
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 140 bp overlap