chr3 : 112,404,981 – 112,405,424
443 bp 108 TFs 0 linked genes
This 443 bp open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:112,399,981 – 112,410,424
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP WTC11 ENCFF556XTF 334 bp overlap
ChIP WTC11 ENCFF556XTF 353 bp overlap
AR 1 dataset
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 219 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 202 bp overlap
ATF2 2 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Motif DE_24h DE_24h-ATF2_MA1632.2 10 bp overlap
ATF4 2 datasets
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
Motif DE_24h DE_24h-ATF4_MA0833.3 10 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 65 bp overlap
CEBPG 2 datasets
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
Motif DE_24h DE_24h-CEBPG_MA1636.2 10 bp overlap
CREB1 4 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 305 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 262 bp overlap
Crx 3 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
ERF::FOXI1 1 dataset
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::FOXO1 1 dataset
Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
FOSL1::JUND 2 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUND_MA1143.2 9 bp overlap
FOSL2::JUND 2 datasets
Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2JUND_MA1145.2 10 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXJ2::ELF1 1 dataset
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 213 bp overlap
ChIP DE DE-GATA4-2 326 bp overlap
GATA5 2 datasets
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 178 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 369 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 443 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 369 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 315 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 321 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 298 bp overlap
GLI3 2 datasets
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Motif DE_24h DE_24h-GLI3_MA1491.3 15 bp overlap
GLIS2 2 datasets
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
Motif DE_24h DE_24h-GLIS2_MA0736.1 14 bp overlap
GLIS3 3 datasets
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
Motif DE_24h DE_24h-GLIS3_MA0737.1 14 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 231 bp overlap
GSC 3 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 3 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 316 bp overlap
Gata3 2 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IRF7 2 datasets
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Motif DE_24h DE_24h-IRF7_MA0772.2 13 bp overlap
JUN 5 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
Motif DE_24h DE_24h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 280 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 404 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 443 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 346 bp overlap
Lhx1 2 datasets
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Motif DE_24h DE_24h-Lhx1_MA1518.3 10 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 184 bp overlap
MYB 4 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
MYBL2 2 datasets
ChIP WTC11 ENCFF166TKT 307 bp overlap
ChIP WTC11 ENCFF166TKT 104 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif DE_24h DE_24h-Mafb_MA0117.3 11 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 81 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 208 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 443 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 320 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 443 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 340 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 329 bp overlap
ChIP hESC GSE18292.NANOG.hESC 176 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 306 bp overlap
NRL 2 datasets
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Motif DE_24h DE_24h-NRL_MA0842.3 12 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nkx2-1 2 datasets
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_24h DE_24h-Nkx2-1_MA1994.2 7 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_24h DE_24h-Nr1h3Rxra_MA0494.2 16 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
OTX1 3 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 4 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Motif DE_24h DE_24h-OTX2_MA0712.3 7 bp overlap
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 216 bp overlap
PITX1 3 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 3 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 4 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
POU3F1 4 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F2 4 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
POU3F3 4 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
Motif DE_24h DE_24h-POU4F2_MA0683.2 15 bp overlap
POU5F1 9 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 428 bp overlap
ChIP GM23338 ENCFF333SNB 288 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 395 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 178 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 172 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap
Pou5f1::Sox2 4 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
RHOXF1 3 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Rarg 3 datasets
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
Motif DE_24h DE_24h-Rarg_MA0860.1 17 bp overlap
SIX2 2 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_24h DE_24h-SIX2_MA1119.2 11 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 282 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 246 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 227 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 183 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 294 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 211 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 158 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 224 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 443 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 219 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 277 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 305 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 190 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBX18 2 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
THRA 2 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif DE_24h DE_24h-THRA_MA1969.2 18 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
Motif DE_24h DE_24h-THRB_MA1576.2 18 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 309 bp overlap
TRPS1 2 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 230 bp overlap
ZNF135 3 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF320 3 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 2 datasets
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF692 2 datasets
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
Motif DE_24h DE_24h-ZNF692_MA1986.2 8 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_24h DE_24h-ZNF770_MA2099.1 8 bp overlap
ZNF85 3 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif DE_24h DE_24h-ZNF85_MA1720.2 12 bp overlap
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Zfp809 3 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Zfx 2 datasets
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Motif DE_24h DE_24h-Zfx_MA0146.3 10 bp overlap
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