chr3 : 97,009,180 – 97,009,930

750 bp 85 TFs 0 linked genes

This 750 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

85 transcription factors

ARID1A 1 dataset

ChIP NGP GSE134626.ARID1A.NGP 212 bp overlap

ASCL1 5 datasets

Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

Motif DE_60h DE_60h-ASCL1_MA1100.3 8 bp overlap

Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap

ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 124 bp overlap

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 358 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 629 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 162 bp overlap

Ascl2 2 datasets

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 2 datasets

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap

BRD4 1 dataset

ChIP Jurkat GSE83777.BRD4.Jurkat 208 bp overlap

CRX 1 dataset

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 214 bp overlap

CTCF 2 datasets

ChIP GSC23 GSE139416.CTCF.GSC23 281 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 268 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF262VBH 164 bp overlap

EP300 2 datasets

ChIP H1 ENCFF927IYK 297 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 176 bp overlap

ERF::NHLH1 2 datasets

Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap

Motif DE_60h DE_60h-ERFNHLH1_MA1938.2 16 bp overlap

ERG 1 dataset

ChIP SKNO-1 GSE23730.ERG.SKNO-1 205 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_60h DE_60h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::DRGX 1 dataset

Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap

FLI1 1 dataset

ChIP SKNO-1 GSE23730.FLI1.SKNO-1 269 bp overlap

FLI1::DRGX 1 dataset

Motif DE_60h DE_60h-FLI1DRGX_MA1949.2 14 bp overlap

FOXP4 1 dataset

ChIP WTC11 ENCFF708TAF 377 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 325 bp overlap

ChIP DE DE-GATA6-2 367 bp overlap

HDAC2 3 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 205 bp overlap

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 215 bp overlap

Hnf1A 3 datasets

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap

Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap

IKZF2 1 dataset

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

KLF10 1 dataset

Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap

KLF12 1 dataset

Motif DE_60h DE_60h-KLF12_MA0742.2 9 bp overlap

KLF14 1 dataset

Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap

KLF16 1 dataset

Motif DE_60h DE_60h-KLF16_MA0741.1 11 bp overlap

KLF5 1 dataset

Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap

MAF 2 datasets

Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap

Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap

MAFA 2 datasets

Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap

Motif DE_60h DE_60h-MAFA_MA1521.2 13 bp overlap

MAZ 1 dataset

Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap

MEF2D 2 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 211 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 246 bp overlap

MYB 2 datasets

ChIP Jurkat GSE59657.MYB.Jurkat 312 bp overlap

ChIP MOLT-3 GSE59657.MYB.MOLT-3 480 bp overlap

MYOD1 1 dataset

ChIP RH4 GSE83726.MYOD1.RH4 356 bp overlap

MYOG 2 datasets

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

Motif DE_60h DE_60h-MYOG_MA0500.3 8 bp overlap

NEUROD1 4 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 332 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 212 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 265 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 268 bp overlap

NFIA 3 datasets

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap

Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap

NFIX 3 datasets

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap

Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap

NHLH1 2 datasets

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

Motif DE_60h DE_60h-NHLH1_MA0048.3 9 bp overlap

NHLH2 2 datasets

Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap

Motif DE_60h DE_60h-NHLH2_MA1529.2 16 bp overlap

NOTCH1 1 dataset

ChIP HPBALL GSE39263.NOTCH1.HPBALL 188 bp overlap

NR2C2 3 datasets

Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap

Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap

Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap

Neurod2 2 datasets

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap

OTX2 2 datasets

ChIP WTC11 ENCFF634NAO 245 bp overlap

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 266 bp overlap

Olig2 2 datasets

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap

PATZ1 1 dataset

Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap

POU5F1 1 dataset

ChIP hiPSC GSE56567.POU5F1.hiPSC 168 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 276 bp overlap

PRDM9 2 datasets

Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap

Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap

RAD21 1 dataset

ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap

RBBP5 3 datasets

ChIP H1 ENCFF905HFL 588 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 137 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 298 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 208 bp overlap

RUNX1 1 dataset

ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 249 bp overlap

RXRA 1 dataset

ChIP H1 ENCFF570NHK 201 bp overlap

SALL2 1 dataset

ChIP HEK293 GSE145940.SALL2.HEK293 323 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 256 bp overlap

SP1 3 datasets

Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 289 bp overlap

SP2 1 dataset

Motif DE_60h DE_60h-SP2_MA0516.3 9 bp overlap

SP3 1 dataset

Motif DE_60h DE_60h-SP3_MA0746.3 11 bp overlap

SP4 1 dataset

Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap

SP5 1 dataset

Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap

SP8 1 dataset

Motif DE_60h DE_60h-SP8_MA0747.2 11 bp overlap

SPIB 1 dataset

Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap

Spi1 1 dataset

Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap

TCF12 2 datasets

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 256 bp overlap

TCF4 2 datasets

ChIP CAL-1 GSE76147.TCF4.CAL-1 202 bp overlap

ChIP GEN2-2 GSE76147.TCF4.GEN2-2 223 bp overlap

TCF7L1 3 datasets

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap

Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap

TEAD4 2 datasets

ChIP H1 ENCFF778PAX 62 bp overlap

ChIP SNU-216 GSE44416.TEAD4.SNU-216 177 bp overlap

TFAP4::FLI1 2 datasets

Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap

Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 364 bp overlap

Tcf12 2 datasets

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap

Twist2 2 datasets

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap

Wt1 1 dataset

Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap

ZNF148 1 dataset

Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap

ZNF281 2 datasets

Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap

ChIP WTC11 ENCFF551GAV 377 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 374 bp overlap

ZNF582 2 datasets

Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap

Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap

ZNF682 3 datasets

Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap

Motif DE_48h DE_48h-ZNF682_MA1599.2 11 bp overlap

Motif DE_60h DE_60h-ZNF682_MA1599.2 11 bp overlap

ZNF707 1 dataset

Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap

ZNF768 2 datasets

Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap

Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 2 datasets

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 2 datasets

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap

Zic3 2 datasets

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap

Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap