chr1 : 58,447,893 58,448,830
937 bp 88 TFs 3 linked genes
This 937 bp open chromatin element is linked to OMA1, DAB1, and MYSM1 and is bound by 88 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
OMA1 98.5 kb Distal Multiome
DAB1 98.5 kb Distal Multiome
MYSM1 251.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:58,442,893 – 58,453,830
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 210 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 297 bp overlap
CEBPA 4 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 114 bp overlap
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 122 bp overlap
ChIP U-937 ERP008568.CEBPA.U-937 210 bp overlap
ChIP liver ERP002306.CEBPA.liver 185 bp overlap
CEBPB 3 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 822 bp overlap
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 203 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 180 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 115 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 223 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 247 bp overlap
ESR1 8 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 268 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 143 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 275 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 162 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 119 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 143 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 259 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 275 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 422 bp overlap
FOXA1 2 datasets
Motif DE_60h DE_60h-FOXA1_MA0148.5 8 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 196 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 454 bp overlap
ChIP DE DE-FOXA2-1 727 bp overlap
ChIP DE DE-FOXA2-2 747 bp overlap
Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap
FOXB1 1 dataset
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXG1 1 dataset
Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
FOXP3 1 dataset
Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap
FOXS1 1 dataset
Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_60h DE_60h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA1 4 datasets
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 110 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 327 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 227 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 244 bp overlap
GATA2 13 datasets
ChIP ESF GSE108408.GATA2.ESF 489 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 137 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 137 bp overlap
ChIP SH-SY5Y ENCFF485YIB 371 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 591 bp overlap
ChIP SK-N-SH ENCFF764OZD 355 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 270 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 446 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 553 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 351 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 330 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 484 bp overlap
GATA3 15 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 212 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 190 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 249 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 183 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 285 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 310 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 279 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 249 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 150 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 187 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 219 bp overlap
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 312 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 253 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 182 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 202 bp overlap
ChIP DE DE-GATA4-1 769 bp overlap
ChIP DE DE-GATA4-2 786 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 229 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 507 bp overlap
ChIP foregut GSE117136.GATA4.foregut 541 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 515 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 490 bp overlap
GATA6 15 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 241 bp overlap
ChIP DE DE-GATA6-1 896 bp overlap
ChIP DE DE-GATA6-2 814 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 714 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 761 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 762 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 792 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 857 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 898 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 653 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 670 bp overlap
ChIP foregut GSE117136.GATA6.foregut 320 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 314 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 254 bp overlap
GFI1 1 dataset
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 341 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 437 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 416 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 63 bp overlap
ChIP HepG2 ENCFF854JLR 99 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 356 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 220 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 254 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MYC 1 dataset
ChIP BJ GSE36570.MYC.BJ 129 bp overlap
MYCN 6 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 173 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 263 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 319 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 234 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 257 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 390 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 211 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 191 bp overlap
NFYA 1 dataset
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
NFYB 1 dataset
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
NFYC 1 dataset
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
NR3C1 1 dataset
ChIP HCC1937 GSE152203.NR3C1.HCC1937 245 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 177 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 200 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 304 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
POU3F4 1 dataset
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 239 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
RBM25 1 dataset
ChIP K562 ENCFF248CGR 275 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 352 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 272 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 193 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 590 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 257 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 647 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 439 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 352 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 170 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 215 bp overlap
SP1 1 dataset
Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Stat5b 1 dataset
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 184 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 239 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 213 bp overlap
TCF7 1 dataset
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TEAD4 3 datasets
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 375 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 390 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 280 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 530 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 216 bp overlap
TFAP2C 3 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 370 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 195 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 448 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 182 bp overlap
ZNF135 1 dataset
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF263 1 dataset
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 205 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF85 1 dataset
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap