chr3 : 63,645,132 63,645,996
864 bp 90 TFs 2 linked genes
This 864 bp open chromatin element is linked to ATXN7 and THOC7 and is bound by 90 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ATXN7 218.2 kb Distal Multiome
THOC7 218.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:63,640,132 – 63,650,996
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 785 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 85 bp overlap
CTCF 1 dataset
ChIP MCF-7 ENCFF844STM 191 bp overlap
DUXA 3 datasets
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Motif DE_24h DE_24h-DUXA_MA0884.2 13 bp overlap
Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap
E2F1 2 datasets
ChIP MCF-7 ENCFF692OYJ 651 bp overlap
ChIP MCF-7 ENCFF692OYJ 612 bp overlap
ESR1 2 datasets
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 64 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 89 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCFF348ABN 179 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXA1 13 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
Motif DE_24h DE_24h-FOXA1_MA0148.5 8 bp overlap
Motif ES_0h ES_0h-FOXA1_MA0148.5 8 bp overlap
ChIP HepG2 ENCFF207NVJ 195 bp overlap
ChIP HepG2 ENCFF361KNY 285 bp overlap
ChIP HepG2 ENCFF740VZW 173 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 59 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 213 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 81 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 53 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 154 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 143 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 96 bp overlap
FOXA2 8 datasets
ChIP DE DE-FOXA2-1 690 bp overlap
ChIP DE DE-FOXA2-2 558 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
Motif DE_24h DE_24h-FOXA2_MA0047.4 8 bp overlap
Motif ES_0h ES_0h-FOXA2_MA0047.4 8 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF570ABM 312 bp overlap
ChIP HepG2 ENCFF894AYY 201 bp overlap
FOXA3 4 datasets
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
Motif DE_24h DE_24h-FOXA3_MA1683.2 7 bp overlap
Motif ES_0h ES_0h-FOXA3_MA1683.2 7 bp overlap
ChIP HepG2 ENCFF005KGL 181 bp overlap
FOXB1 3 datasets
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap
FOXC1 3 datasets
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
Motif DE_24h DE_24h-FOXC1_MA0032.2 11 bp overlap
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXC2 3 datasets
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
Motif DE_24h DE_24h-FOXC2_MA0846.2 11 bp overlap
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXD1 3 datasets
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
Motif DE_24h DE_24h-FOXD1_MA0031.2 7 bp overlap
Motif ES_0h ES_0h-FOXD1_MA0031.2 7 bp overlap
FOXD2 3 datasets
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
Motif DE_24h DE_24h-FOXD2_MA0847.4 11 bp overlap
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXD3 3 datasets
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
Motif DE_24h DE_24h-FOXD3_MA0041.3 14 bp overlap
Motif ES_0h ES_0h-FOXD3_MA0041.3 14 bp overlap
FOXE1 3 datasets
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
Motif DE_24h DE_24h-FOXE1_MA1487.3 12 bp overlap
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXF2 3 datasets
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
Motif DE_24h DE_24h-FOXF2_MA0030.2 9 bp overlap
Motif ES_0h ES_0h-FOXF2_MA0030.2 9 bp overlap
FOXG1 3 datasets
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
Motif DE_24h DE_24h-FOXG1_MA0613.1 8 bp overlap
Motif ES_0h ES_0h-FOXG1_MA0613.1 8 bp overlap
FOXI1 3 datasets
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
Motif DE_24h DE_24h-FOXI1_MA0042.2 7 bp overlap
Motif ES_0h ES_0h-FOXI1_MA0042.2 7 bp overlap
FOXK1 4 datasets
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
Motif DE_24h DE_24h-FOXK1_MA0852.3 7 bp overlap
Motif ES_0h ES_0h-FOXK1_MA0852.3 7 bp overlap
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXK2 3 datasets
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
Motif DE_24h DE_24h-FOXK2_MA1103.3 7 bp overlap
Motif ES_0h ES_0h-FOXK2_MA1103.3 7 bp overlap
FOXL1 3 datasets
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
Motif DE_24h DE_24h-FOXL1_MA0033.2 7 bp overlap
Motif ES_0h ES_0h-FOXL1_MA0033.2 7 bp overlap
FOXN3 3 datasets
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
Motif DE_24h DE_24h-FOXN3_MA1489.1 8 bp overlap
Motif ES_0h ES_0h-FOXN3_MA1489.1 8 bp overlap
FOXO4 3 datasets
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
Motif DE_24h DE_24h-FOXO4_MA0848.1 7 bp overlap
Motif ES_0h ES_0h-FOXO4_MA0848.1 7 bp overlap
FOXO6 3 datasets
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
Motif DE_24h DE_24h-FOXO6_MA0849.1 7 bp overlap
Motif ES_0h ES_0h-FOXO6_MA0849.1 7 bp overlap
FOXP1 5 datasets
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
Motif DE_24h DE_24h-FOXP1_MA0481.4 7 bp overlap
Motif ES_0h ES_0h-FOXP1_MA0481.4 7 bp overlap
ChIP HepG2 ENCFF823ERM 341 bp overlap
ChIP WTC11 ENCFF338WGC 525 bp overlap
FOXP2 3 datasets
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
Motif DE_24h DE_24h-FOXP2_MA0593.2 9 bp overlap
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
FOXP3 3 datasets
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
Motif DE_24h DE_24h-FOXP3_MA0850.1 7 bp overlap
Motif ES_0h ES_0h-FOXP3_MA0850.1 7 bp overlap
FOXP4 5 datasets
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
Motif DE_24h DE_24h-FOXP4_MA2117.1 7 bp overlap
Motif ES_0h ES_0h-FOXP4_MA2117.1 7 bp overlap
ChIP HepG2 ENCFF462ULY 431 bp overlap
ChIP WTC11 ENCFF708TAF 377 bp overlap
FOXS1 3 datasets
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Motif DE_24h DE_24h-FOXS1_MA2118.1 8 bp overlap
Motif ES_0h ES_0h-FOXS1_MA2118.1 8 bp overlap
Foxf1 3 datasets
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Motif DE_24h DE_24h-Foxf1_MA1606.2 7 bp overlap
Motif ES_0h ES_0h-Foxf1_MA1606.2 7 bp overlap
Foxj2 3 datasets
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Motif DE_24h DE_24h-Foxj2_MA0614.1 8 bp overlap
Motif ES_0h ES_0h-Foxj2_MA0614.1 8 bp overlap
Foxj3 3 datasets
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Motif DE_24h DE_24h-Foxj3_MA0851.2 9 bp overlap
Motif ES_0h ES_0h-Foxj3_MA0851.2 9 bp overlap
Foxl2 3 datasets
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Motif DE_24h DE_24h-Foxl2_MA1607.2 10 bp overlap
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
Foxo1 3 datasets
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Motif DE_24h DE_24h-Foxo1_MA0480.3 7 bp overlap
Motif ES_0h ES_0h-Foxo1_MA0480.3 7 bp overlap
Foxo3 3 datasets
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
Motif DE_24h DE_24h-Foxo3_MA0157.4 7 bp overlap
Motif ES_0h ES_0h-Foxo3_MA0157.4 7 bp overlap
GATA3 2 datasets
ChIP MCF-7 ENCFF178GBS 461 bp overlap
ChIP MCF-7 ENCFF437NQS 371 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 265 bp overlap
GATA6 1 dataset
ChIP PATU8988 GSE47535.GATA6.PATU8988 175 bp overlap
HDAC1 2 datasets
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 85 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 147 bp overlap
HDAC2 2 datasets
ChIP MCF-7 ENCFF881POI 357 bp overlap
ChIP MCF-7 ENCFF881POI 385 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP MCF-7 ENCFF169IXS 389 bp overlap
ChIP MCF-7 ENCFF169IXS 437 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 81 bp overlap
MED12 1 dataset
ChIP MCF-7_E2 GSE124448.MED12.MCF-7_E2 88 bp overlap
MYC 1 dataset
ChIP MCF-7 ENCFF394LGD 311 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 51 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 132 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCFF329FZB 92 bp overlap
OTX1 1 dataset
ChIP MCF-7 ENCFF645GYL 76 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 371 bp overlap
PAX8 1 dataset
ChIP MCF-7 ENCFF361SPS 296 bp overlap
POLR2A 6 datasets
ChIP Peyer's patch ENCFF767HVN 417 bp overlap
ChIP Peyer's patch ENCFF990IYL 385 bp overlap
ChIP body of pancreas ENCFF501FEC 479 bp overlap
ChIP stomach ENCFF719RDO 325 bp overlap
ChIP transverse colon ENCFF098HBD 443 bp overlap
ChIP transverse colon ENCFF610RWV 379 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 758 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 678 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 497 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 356 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 738 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 685 bp overlap
SMARCB1 4 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 97 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 92 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 56 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 93 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 60 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 241 bp overlap
SOX10 3 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 740 bp overlap
SOX4 3 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif DE_24h DE_24h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
STAT3 8 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 91 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 139 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 209 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 97 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 214 bp overlap
ChIP MCF-7_jc5846 GSE126004.STAT3.MCF-7_jc5846 115 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 159 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 55 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 218 bp overlap
Sox11 3 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif DE_24h DE_24h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
TSC22D2 1 dataset
ChIP MCF-7 ENCFF588BUN 72 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 191 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 94 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 118 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 159 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap
ZHX2 2 datasets
ChIP MCF-7 ENCFF733XRY 373 bp overlap
ChIP MCF-7 ENCSR876UYH.ZHX2.MCF-7 115 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 115 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 86 bp overlap
ZNF217 3 datasets
ChIP MCF-7 ENCFF299BWK 543 bp overlap
ChIP MCF-7 ENCFF299BWK 557 bp overlap
ChIP MCF-7 ENCFF379OSU 470 bp overlap
ZNF281 2 datasets
ChIP HepG2 ENCFF585QNU 210 bp overlap
ChIP WTC11 ENCFF551GAV 377 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Zfp335 4 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap