chr3 : 29,285,477 29,286,040
563 bp 84 TFs 2 linked genes
This 563 bp open chromatin element is linked to RBMS3 and RBMS3-AS3 and is bound by 84 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RBMS3 4.4 kb Proximal Proximity
RBMS3-AS3 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:29,280,477 – 29,291,040
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AR 2 datasets
ChIP A-375 GSE116189.AR.A-375 202 bp overlap
ChIP LNCaP GSE80256.AR.LNCaP 347 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 349 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 563 bp overlap
BRD2 13 datasets
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 236 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 360 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 360 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 219 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 219 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 236 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 102 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 105 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 320 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD2.SUM159PT_DMSO 299 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 399 bp overlap
ChIP SUM159PT_R_JQ1 GSE131097.BRD2.SUM159PT_R_JQ1 239 bp overlap
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 164 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 158 bp overlap
BRD4 24 datasets
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 563 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 549 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 558 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 359 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 529 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 238 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 267 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 281 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 550 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 184 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 301 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 301 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 563 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 563 bp overlap
ChIP OCI-Ly1_DMSO GSE53601.BRD4.OCI-Ly1_DMSO 136 bp overlap
ChIP OCI-Ly1_DMSO GSE53601.BRD4.OCI-Ly1_DMSO 317 bp overlap
ChIP OCI-Ly1_JQ1 GSE53601.BRD4.OCI-Ly1_JQ1 362 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 348 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 219 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 471 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 493 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 154 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 477 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 549 bp overlap
BRD7 1 dataset
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 457 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 299 bp overlap
CEBPB 2 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 259 bp overlap
ChIP Ishikawa ENCFF010USJ 261 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 511 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 375 bp overlap
CTCF 14 datasets
ChIP AG10803 ENCFF549AQK 257 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 257 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 272 bp overlap
ChIP coronary artery ENCFF483TFF 315 bp overlap
ChIP coronary-artery ENCSR175FLL.CTCF.coronary-artery 268 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 126 bp overlap
ChIP gastrocnemius medialis ENCFF307PRR 309 bp overlap
ChIP gastrocnemius medialis ENCFF307PRR 457 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 227 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 180 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 208 bp overlap
ChIP ovary ENCFF845YUT 326 bp overlap
ChIP thyroid gland ENCFF631QRY 361 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 290 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 547 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 323 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHGFP_96H GSE61944.ELF1.SK-N-MC_SHGFP_96H 147 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCFF364ZWT 400 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 552 bp overlap
ChIP tibial nerve ENCFF346AYA 344 bp overlap
ERG 9 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 208 bp overlap
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 186 bp overlap
ChIP RWPE-1 GSE114241.ERG.RWPE-1 414 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 198 bp overlap
ChIP aortic-endothelial-cell_D21 GSE139377.ERG.aortic-endothelial-cell_D21 177 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 157 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 177 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 168 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 156 bp overlap
ETS1 1 dataset
ChIP 786-O GSE86092.ETS1.786-O 202 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 143 bp overlap
FLI1 4 datasets
ChIP A-673 GSE99959.FLI1.A-673 259 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 175 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 144 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 151 bp overlap
FOXL2 1 dataset
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 323 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 105 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 161 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 130 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 277 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 291 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 240 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 248 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 267 bp overlap
HNRNPK 3 datasets
ChIP HepG2 ENCFF493GNS 148 bp overlap
ChIP HepG2 ENCFF826MXP 82 bp overlap
ChIP K562 ENCFF954RNO 73 bp overlap
KMT2A 4 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 124 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 552 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 507 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 563 bp overlap
MAX 3 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 123 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 116 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 196 bp overlap
MED1 4 datasets
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.MED1.SUM159PT_100nMtrametinib300nMJQ1_24h 295 bp overlap
ChIP SUM159PT_300nMJQ1_24h GSE87418.MED1.SUM159PT_300nMJQ1_24h 224 bp overlap
ChIP SUM159PT_300nMJQ1_24h GSE87418.MED1.SUM159PT_300nMJQ1_24h 176 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 210 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 563 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 413 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 220 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 335 bp overlap
MYOD1 3 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 244 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 316 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 181 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 325 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 274 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 136 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 133 bp overlap
NFIC 4 datasets
ChIP Ishikawa ENCFF029AAD 381 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 498 bp overlap
ChIP SK-N-SH ENCFF965AKM 257 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 179 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 563 bp overlap
NUTM1 2 datasets
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 214 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 563 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 295 bp overlap
PHIP 2 datasets
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 312 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 113 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 507 bp overlap
POLR2A 4 datasets
ChIP SK-N-MC ENCFF088IVG 341 bp overlap
ChIP SK-N-SH ENCFF683PFH 391 bp overlap
ChIP adrenal gland ENCFF843OBJ 327 bp overlap
ChIP thyroid gland ENCFF979LRR 413 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 273 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 226 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 271 bp overlap
RAD21 4 datasets
ChIP Ishikawa ENCFF570JVV 218 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 156 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 563 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 560 bp overlap
RELA 12 datasets
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 121 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 145 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 196 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 111 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 200 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 146 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 132 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 169 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 179 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 150 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 174 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 200 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 563 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 153 bp overlap
SMAD3 2 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 142 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 236 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 186 bp overlap
SMARCA4 9 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 370 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 165 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 296 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 536 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 317 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 563 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 422 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 195 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 467 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 145 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 225 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 60 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 229 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 409 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 252 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 249 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 508 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 203 bp overlap
SUPT5H 1 dataset
ChIP HeLa GSE125534.SUPT5H.HeLa 167 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 516 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 453 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 518 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 542 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 182 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 458 bp overlap
WDR5 2 datasets
ChIP breast-cancer_shLuc GSE113279.WDR5.breast-cancer_shLuc 237 bp overlap
ChIP breast-cancer_shWDR5 GSE113279.WDR5.breast-cancer_shWDR5 254 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 563 bp overlap
ChIP HEK293 ENCFF865LIO 563 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 436 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 539 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 330 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 153 bp overlap
ZNF10 3 datasets
ChIP HEK293 ENCFF611ZJI 385 bp overlap
ChIP HEK293 ENCFF611ZJI 188 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 563 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 287 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 400 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 187 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 282 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 408 bp overlap