chr3 : 2,657,855 – 2,658,589
734 bp 112 TFs 0 linked genes
This 734 bp open chromatin element has no linked target genes and is bound by 112 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:2,652,855 – 2,663,589
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 272 bp overlap
CDK8 1 dataset
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 390 bp overlap
CDX2 1 dataset
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
DBP 1 dataset
Motif DE_12h DE_12h-DBP_MA0639.2 10 bp overlap
Ddit3::Cebpa 1 dataset
Motif DE_12h DE_12h-Ddit3Cebpa_MA0019.2 10 bp overlap
E2F6 2 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
Motif DE_24h DE_24h-EBF1_MA0154.5 11 bp overlap
EHF 4 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
ELF1 4 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif DE_24h DE_24h-ELF1_MA0473.4 9 bp overlap
Motif DE_24h DE_24h-ELF1_MA0473.4 9 bp overlap
ELF2 2 datasets
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
Motif DE_24h DE_24h-ELF2_MA1483.3 10 bp overlap
ELF3 4 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
ELK1 2 datasets
Motif DE_12h DE_12h-ELK1_MA0028.3 9 bp overlap
Motif DE_24h DE_24h-ELK1_MA0028.3 9 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ERF 2 datasets
Motif DE_12h DE_12h-ERF_MA0760.2 9 bp overlap
Motif DE_24h DE_24h-ERF_MA0760.2 9 bp overlap
ERF::FOXI1 5 datasets
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_24h DE_24h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_24h DE_24h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::FOXO1 1 dataset
Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap
ETS1 2 datasets
Motif DE_12h DE_12h-ETS1_MA0098.4 9 bp overlap
Motif DE_24h DE_24h-ETS1_MA0098.4 9 bp overlap
ETS2 2 datasets
Motif DE_12h DE_12h-ETS2_MA1484.2 9 bp overlap
Motif DE_24h DE_24h-ETS2_MA1484.2 9 bp overlap
ETV1 4 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
ETV2 2 datasets
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
Motif DE_24h DE_24h-ETV2_MA0762.2 9 bp overlap
ETV2::FOXI1 4 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_24h DE_24h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_24h DE_24h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV3 2 datasets
Motif DE_12h DE_12h-ETV3_MA0763.2 9 bp overlap
Motif DE_24h DE_24h-ETV3_MA0763.2 9 bp overlap
ETV4 2 datasets
Motif DE_12h DE_12h-ETV4_MA0764.4 9 bp overlap
Motif DE_24h DE_24h-ETV4_MA0764.4 9 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
Ebf4 2 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif DE_24h DE_24h-Ebf4_MA2122.1 11 bp overlap
Elf5 3 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
Erg 4 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap
Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap
FEV 2 datasets
Motif DE_12h DE_12h-FEV_MA0156.4 9 bp overlap
Motif DE_24h DE_24h-FEV_MA0156.4 9 bp overlap
FLI1 2 datasets
Motif DE_12h DE_12h-FLI1_MA0475.3 9 bp overlap
Motif DE_24h DE_24h-FLI1_MA0475.3 9 bp overlap
FLI1::FOXI1 5 datasets
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_24h DE_24h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_24h DE_24h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 329 bp overlap
FOXJ2::ELF1 5 datasets
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_24h DE_24h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_24h DE_24h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELF1 5 datasets
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 3 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXO1::FLI1 3 datasets
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1FLI1_MA1956.2 13 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GABPA 4 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap
Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hoxa13 1 dataset
Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
IKZF1 5 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
IKZF2 5 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 4 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
JUN 3 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 68 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 78 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
MAF::NFE2 2 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_24h DE_24h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_24h DE_24h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
MED1 2 datasets
ChIP MOLM-14 GSE65138.MED1.MOLM-14 133 bp overlap
ChIP MOLM-14 GSE65138.MED1.MOLM-14 192 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MITF 4 datasets
ChIP 501-mel GSE137522.MITF.501-mel 376 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 379 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 345 bp overlap
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
MLLT1 1 dataset
ChIP MOLM-13 GSE82116.MLLT1.MOLM-13 242 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
NFIB 2 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif DE_24h DE_24h-NFIB_MA1643.2 17 bp overlap
NFIC 2 datasets
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
Motif DE_24h DE_24h-NFIC_MA1527.2 15 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap
Motif DE_24h DE_24h-NFIX_MA1528.2 14 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nfe2l2 2 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_24h DE_24h-Nfe2l2_MA0150.3 11 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_24h DE_24h-Nr1h3Rxra_MA0494.2 16 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 156 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 290 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 51 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 248 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 396 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 608 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 524 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 491 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 439 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 439 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 72 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
TBR1 2 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 3 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 3 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX21 2 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 3 datasets
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_24h DE_24h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_24h DE_24h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_24h DE_24h-TFAP2C_MA0524.3 11 bp overlap
TFE3 2 datasets
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
ChIP K562 ENCFF697ABG 317 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
THRA 2 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif DE_24h DE_24h-THRA_MA1969.2 18 bp overlap
Tbx6 4 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
USF1 2 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 129 bp overlap
USF2 1 dataset
Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap
ZNF175 4 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap
Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif DE_24h DE_24h-ZNF677_MA2101.1 12 bp overlap
ZNF75D 2 datasets
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_24h DE_24h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
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