chr1 : 51,326,378 51,326,935
557 bp 72 TFs 1 linked gene
This 557 bp open chromatin element is linked to TTC39A and is bound by 72 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
TTC39A 3.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:51,321,378 – 51,331,935
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 214 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 100 bp overlap
BRD3 4 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 94 bp overlap
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 283 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 53 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 272 bp overlap
BRD4 8 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 495 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 177 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 215 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 464 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 557 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 53 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 442 bp overlap
ChIP MCF-7_E2 GSE55921.BRD4.MCF-7_E2 244 bp overlap
CTCF 1 dataset
ChIP heart ENCSR232OFD.CTCF.heart 339 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 300 bp overlap
ChIP BLaER1 ENCFF262VBH 165 bp overlap
ChIP BLaER1 ENCFF274GAT 85 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF113OPQ 118 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 63 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 134 bp overlap
ESR1 1 dataset
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 124 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 423 bp overlap
GATA1 8 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 110 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 80 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 323 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 165 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 220 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCFF867JAR 557 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 451 bp overlap
GATA2 5 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 315 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 309 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 172 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 223 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 297 bp overlap
ChIP DE DE-GATA4-2 368 bp overlap
ChIP G296S GSE85628.GATA4.G296S 445 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 445 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 284 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 404 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 283 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 325 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 283 bp overlap
ChIP DE DE-GATA6-2 409 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 372 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 264 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 376 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 479 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 499 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 315 bp overlap
ChIP foregut GSE117136.GATA6.foregut 374 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 360 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 244 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 362 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 341 bp overlap
HDGF 3 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 187 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 144 bp overlap
ChIP K562 ENCFF682FBH 108 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 115 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 281 bp overlap
ChIP K562 ENCFF055GAZ 418 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 486 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 167 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 287 bp overlap
ChIP SK-N-SH ENCFF285GEQ 438 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 164 bp overlap
ChIP K562 ENCFF830LVJ 281 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 269 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 84 bp overlap
MAZ 2 datasets
ChIP K-562 ENCSR000EFX.MAZ.K-562 145 bp overlap
ChIP K562 ENCFF809XHP 82 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 82 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 208 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 357 bp overlap
ChIP K562 ENCFF320GSD 228 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 484 bp overlap
MTA3 3 datasets
ChIP K-562 ENCSR180NCY.MTA3.K-562 209 bp overlap
ChIP K-562 ENCSR914NEI.MTA3.K-562 330 bp overlap
ChIP K562 ENCFF289UFB 79 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 557 bp overlap
NCOR1 1 dataset
ChIP K562 ENCFF866HRM 162 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 217 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF689EWI 182 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 363 bp overlap
ChIP K562 ENCFF286KMN 187 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 260 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 188 bp overlap
ChIP islet ERP001456.PDX1.islet 141 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 343 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 342 bp overlap
ChIP K562 ENCFF236IUS 457 bp overlap
RCOR1 2 datasets
ChIP K562 ENCFF216EEJ 297 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 243 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR138FUZ.RNF2.K-562 162 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 157 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 59 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 448 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 557 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 427 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 467 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 286 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 224 bp overlap
TAL1 2 datasets
ChIP CD34 GSE52924.TAL1.CD34 97 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 207 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 153 bp overlap
TCF12 1 dataset
ChIP K562 ENCFF931DJY 391 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 167 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF584VSB 321 bp overlap
XRCC5 1 dataset
ChIP K562 ENCFF115CTZ 86 bp overlap
ZEB2 1 dataset
ChIP K562 ENCFF975RXS 182 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 160 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 122 bp overlap
ZNF197 1 dataset
ChIP K562 ENCFF872BAU 275 bp overlap
ZNF24 4 datasets
ChIP K-562 ENCSR117WTM.ZNF24.K-562 340 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 420 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 245 bp overlap
ChIP K562 ENCFF615YYW 296 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 410 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 228 bp overlap
ZNF639 2 datasets
ChIP K562 ENCFF271FQR 349 bp overlap
ChIP K562 ENCFF271FQR 549 bp overlap
ZNF7 1 dataset
ChIP K562 ENCFF096OHS 197 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 191 bp overlap