Located in centrosome. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for TTC39A. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TTC39A upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TTC39A, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:51,296,022–51,297,319 | at TSS | At TSS | 580 | |
| chr1:51,326,378–51,326,935 | 3.6 kb | Proximal (<10kb) | 72 | |
| chr1:51,330,127–51,331,039 | at TSS | At TSS | 288 | |
| chr1:51,331,225–51,331,702 | 661 bp | At TSS | 513 | |
| chr1:51,344,517–51,345,671 | at TSS | At TSS | 345 |
Genomic view of the TTC39A locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.