chr2 : 209,639,834 209,640,480
646 bp 87 TFs 0 linked genes
This 646 bp open chromatin element has no linked target genes and is bound by 87 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:209,634,834 – 209,645,480
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 7 datasets
ChIP VCaP GSE148358.AR.VCaP 137 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 222 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 646 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 147 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 199 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 238 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 73 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 132 bp overlap
Ar 1 dataset
Motif DE_36h DE_36h-Ar_MA0007.4 16 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 171 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 330 bp overlap
BRD4 2 datasets
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 185 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 50 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 113 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 145 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 250 bp overlap
CTCF 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 185 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 130 bp overlap
ELF1 1 dataset
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 207 bp overlap
ERF 1 dataset
Motif DE_36h DE_36h-ERF_MA0760.2 9 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 95 bp overlap
FOSL1 1 dataset
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 56 bp overlap
FOXA1 2 datasets
Motif DE_36h DE_36h-FOXA1_MA0148.5 8 bp overlap
Motif DE_48h DE_48h-FOXA1_MA0148.5 8 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 118 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 74 bp overlap
ChIP DE DE-FOXA2-1 521 bp overlap
ChIP DE DE-FOXA2-2 547 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 98 bp overlap
FOXB1 2 datasets
Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
FOXC1 2 datasets
Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
FOXC2 2 datasets
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
FOXH1 1 dataset
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 116 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 137 bp overlap
FOXO6 2 datasets
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
Motif DE_48h DE_48h-FOXO6_MA0849.1 7 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 158 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 105 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 465 bp overlap
ChIP DE DE-GATA4-2 646 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 176 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 176 bp overlap
ChIP AGS GSE51705.GATA6.AGS 113 bp overlap
ChIP DE DE-GATA6-1 505 bp overlap
ChIP DE DE-GATA6-2 584 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 533 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 478 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 467 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 488 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 540 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 553 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 82 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 246 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 101 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 358 bp overlap
GRHL2 2 datasets
ChIP HBE GSE46194.GRHL2.HBE 94 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 92 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 54 bp overlap
HNF4A 1 dataset
Motif DE_48h DE_48h-HNF4A_MA1494.2 14 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
JUNB 1 dataset
ChIP keratinocyte_CTR GSE139685.JUNB.keratinocyte_CTR 110 bp overlap
JUND 1 dataset
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 57 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 87 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 178 bp overlap
MYBL2 1 dataset
Motif DE_48h DE_48h-MYBL2_MA0777.1 15 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 80 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 81 bp overlap
NFYA 1 dataset
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
NFYB 1 dataset
Motif DE_48h DE_48h-NFYB_MA0502.3 9 bp overlap
NFYC 1 dataset
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 82 bp overlap
NR3C1 2 datasets
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 252 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 289 bp overlap
Nr2F6 1 dataset
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
Nr2f6 1 dataset
Motif DE_48h DE_48h-Nr2f6_MA0677.2 13 bp overlap
ONECUT2 2 datasets
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 108 bp overlap
ChIP MKN74 GSE113045.ONECUT2.MKN74 52 bp overlap
PGR 1 dataset
Motif DE_36h DE_36h-PGR_MA2327.1 9 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 305 bp overlap
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 54 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 429 bp overlap
PPARD 1 dataset
Motif DE_48h DE_48h-PPARD_MA1550.2 14 bp overlap
RARA 1 dataset
Motif DE_48h DE_48h-RARA_MA0729.1 18 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 90 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 123 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 145 bp overlap
RELA 7 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 184 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 151 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 148 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 201 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 129 bp overlap
ChIP FaDu GSE132018.RELA.FaDu 132 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 210 bp overlap
RXRB 1 dataset
Motif DE_48h DE_48h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_48h DE_48h-RXRG_MA0856.1 14 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
Rxra 1 dataset
Motif DE_48h DE_48h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 121 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 551 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 641 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 475 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 476 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 478 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 321 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 515 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 495 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 117 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 164 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 177 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 56 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 173 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 90 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 437 bp overlap
SOX2 1 dataset
ChIP KNS-62 GSE137459.SOX2.KNS-62 147 bp overlap
STAT1 2 datasets
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 115 bp overlap
ChIP FaDu_DMSO GSE78212.STAT1.FaDu_DMSO 255 bp overlap
STAT3 2 datasets
Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 105 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 303 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 105 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 127 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 160 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 395 bp overlap
TEAD4 4 datasets
ChIP HCT-116 ENCSR000BVJ.TEAD4.HCT-116 51 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 177 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 91 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 121 bp overlap
THRB 1 dataset
Motif DE_48h DE_48h-THRB_MA1574.2 13 bp overlap
TP53 1 dataset
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 90 bp overlap
TP63 18 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 207 bp overlap
ChIP EP156T GSE43111.TP63.EP156T 90 bp overlap
ChIP HaCaT_LacZ GSE60814.TP63.HaCaT_LacZ 90 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 101 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 124 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 95 bp overlap
ChIP HaCaT_dnRAS_TGFB GSE60814.TP63.HaCaT_dnRAS_TGFB 70 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 165 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 269 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 135 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP63.keratinocyte_ADRIA 71 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 143 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 334 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 142 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 137 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 145 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 135 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 137 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 171 bp overlap
ZNF175 1 dataset
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF211 1 dataset
Motif DE_36h DE_36h-ZNF211_MA1974.2 10 bp overlap
ZNF257 2 datasets
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
ZNF528 1 dataset
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap
ZNF8 1 dataset
Motif DE_36h DE_36h-ZNF8_MA1718.1 20 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap