chr2 : 196,407,399 196,409,263
1,864 bp 108 TFs 0 linked genes
This 1.9 kb open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:196,402,399 – 196,414,263
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
AHR 4 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 446 bp overlap
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 1345 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 389 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 1242 bp overlap
ARID3A 2 datasets
ChIP GM12878 ENCFF006WWZ 351 bp overlap
ChIP GM12878 ENCSR778UBR.ARID3A.GM12878 345 bp overlap
ATF2 3 datasets
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 374 bp overlap
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 193 bp overlap
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 58 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 271 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 117 bp overlap
BCL6B 2 datasets
Motif DE_36h DE_36h-BCL6B_MA0731.1 17 bp overlap
Motif DE_48h DE_48h-BCL6B_MA0731.1 17 bp overlap
BCLAF1 2 datasets
ChIP GM12878 ENCFF306JRM 431 bp overlap
ChIP GM12878 ENCFF306JRM 431 bp overlap
BRD4 1 dataset
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 250 bp overlap
CTCF 4 datasets
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 384 bp overlap
Dmrt1 1 dataset
Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap
ELF1 2 datasets
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 232 bp overlap
ELF3 1 dataset
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
EOMES 5 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 159 bp overlap
ChIP hESC GSE26097.EOMES.hESC 385 bp overlap
ChIP hESC GSE26097.EOMES.hESC 208 bp overlap
ChIP hESC GSE26097.EOMES.hESC 305 bp overlap
ETV6 1 dataset
Motif DE_36h DE_36h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 652 bp overlap
ChIP DE DE-FOXA2-2 383 bp overlap
ChIP DE DE-FOXA2-2 641 bp overlap
GABPA 1 dataset
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
GATA2 2 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 234 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 260 bp overlap
ChIP DE DE-GATA4-1 640 bp overlap
ChIP DE DE-GATA4-2 810 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 337 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 824 bp overlap
ChIP DE DE-GATA6-2 1009 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 878 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 1150 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 539 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1447 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 1118 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 1182 bp overlap
GFI1 2 datasets
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 378 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 459 bp overlap
ChIP K562 ENCFF968WBH 521 bp overlap
HSF1 1 dataset
Motif DE_48h DE_48h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif DE_48h DE_48h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 128 bp overlap
IKZF2 4 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF238LYK 58 bp overlap
ChIP GM12878 ENCFF918AID 65 bp overlap
IRF3 1 dataset
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Ikzf3 1 dataset
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
KDM1A 2 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 276 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 230 bp overlap
MEIS1 3 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 590 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 820 bp overlap
MYB 1 dataset
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
NFIA 1 dataset
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 595 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 358 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
Nr2F6 2 datasets
Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
ONECUT1 2 datasets
Motif DE_36h DE_36h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_48h DE_48h-ONECUT1_MA0679.3 9 bp overlap
PBX3 1 dataset
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
PML 3 datasets
ChIP GM12878 ENCSR000BQM.PML.GM12878 808 bp overlap
ChIP GM12878 ENCSR000BQM.PML.GM12878 142 bp overlap
ChIP GM12878 ENCSR000BQM.PML.GM12878 143 bp overlap
POLR2A 5 datasets
ChIP GM12878 ENCFF263VRI 481 bp overlap
ChIP GM12878 ENCFF412KAE 208 bp overlap
ChIP GM12878 ENCFF412KAE 325 bp overlap
ChIP GM12891 ENCFF012SUT 565 bp overlap
ChIP GM12891 ENCFF012SUT 89 bp overlap
POU2F1 1 dataset
Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap
POU2F3 1 dataset
Motif DE_48h DE_48h-POU2F3_MA0627.3 9 bp overlap
POU3F3 1 dataset
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
Ptf1A 1 dataset
Motif DE_48h DE_48h-Ptf1A_MA1618.2 9 bp overlap
RBPJ 3 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 166 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 142 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 244 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 713 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 642 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 328 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 741 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1470 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1335 bp overlap
SMAD5 4 datasets
ChIP GM12878 ENCFF178LKN 465 bp overlap
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 291 bp overlap
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 581 bp overlap
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 314 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 285 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 182 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 58 bp overlap
SOX14 1 dataset
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
SOX17 2 datasets
ChIP DE_D2 DED2-SOX17_Batch_II 704 bp overlap
ChIP DE_D2 DED2-SOX17_Batch_II 311 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1240 bp overlap
SOX18 1 dataset
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SPI1 11 datasets
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 90 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 243 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 105 bp overlap
ChIP GM12878 ENCFF134LCP 123 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 217 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 108 bp overlap
ChIP dendrite GSE58864.SPI1.dendrite 196 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 152 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 112 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 112 bp overlap
SPIB 1 dataset
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
SREBF2 1 dataset
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
STAT2 1 dataset
ChIP GM12878 GSE97661.STAT2.GM12878 191 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Spi1 1 dataset
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAF1 3 datasets
ChIP GM12878 ENCFF746UKX 331 bp overlap
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 182 bp overlap
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 217 bp overlap
TBR1 1 dataset
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
TBX21 3 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCFF951HUW 485 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 672 bp overlap
TBX3 1 dataset
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Tbx6 1 dataset
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
ZBED1 4 datasets
ChIP GM12878 ENCFF007OSW 321 bp overlap
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 168 bp overlap
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 465 bp overlap
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 136 bp overlap
ZBTB40 2 datasets
ChIP GM12878 ENCSR189YYK.ZBTB40.GM12878 378 bp overlap
ChIP GM12878 ENCSR189YYK.ZBTB40.GM12878 349 bp overlap
ZBTB7A 1 dataset
Motif DE_36h DE_36h-ZBTB7A_MA0750.3 9 bp overlap
ZIM3 1 dataset
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
ZKSCAN1 2 datasets
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN1_MA1585.2 9 bp overlap
ZMYM3 1 dataset
ChIP GM12878 GSE97661.ZMYM3.GM12878 424 bp overlap
ZNF143 1 dataset
Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap
ZNF157 1 dataset
Motif DE_36h DE_36h-ZNF157_MA2331.1 21 bp overlap
ZNF217 2 datasets
ChIP GM12878 ENCFF978IGL 465 bp overlap
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 299 bp overlap
ZNF24 2 datasets
ChIP GM12878 ENCFF688STO 341 bp overlap
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 189 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF669 1 dataset
Motif DE_48h DE_48h-ZNF669_MA1985.1 15 bp overlap
ZNF707 1 dataset
Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap
ZNF8 2 datasets
Motif DE_36h DE_36h-ZNF8_MA1718.1 20 bp overlap
Motif DE_48h DE_48h-ZNF8_MA1718.1 20 bp overlap
Zfp809 1 dataset
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap