chr2 : 101,434,975 101,435,402
427 bp 99 TFs 1 linked gene
This 427 bp open chromatin element is linked to RFX8 and is bound by 99 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RFX8 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:101,429,975 – 101,440,402
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
AR 3 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 143 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 253 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 261 bp overlap
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 269 bp overlap
ChIP Hep-G2 GSE69566.ARID1A.Hep-G2 333 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 427 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 395 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 164 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 407 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 427 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 427 bp overlap
BRD2 1 dataset
ChIP LPS141 GSE111253.BRD2.LPS141 301 bp overlap
BRD3 1 dataset
ChIP LPS141 GSE111253.BRD3.LPS141 160 bp overlap
BRD4 15 datasets
ChIP COLO-320 GSE73319.BRD4.COLO-320 393 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 369 bp overlap
ChIP LPS141 GSE111253.BRD4.LPS141 293 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 381 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 387 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 220 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 427 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 336 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 161 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 427 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 317 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 427 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 201 bp overlap
ChIP hESC GSE33281.BRD4.hESC 101 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 266 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 244 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 427 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 208 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 317 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 187 bp overlap
CTCF 11 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 191 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 152 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 173 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 136 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 119 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 120 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 129 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 125 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 205 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 72 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 404 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 355 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 220 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 130 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 240 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 265 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 256 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 234 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 174 bp overlap
EZH1 1 dataset
ChIP ProEs_SHEZH2 GSE59087.EZH1.ProEs_SHEZH2 169 bp overlap
EZH2 3 datasets
ChIP ProEs GSE59087.EZH2.ProEs 253 bp overlap
ChIP neural progenitor cell ENCFF018MKA 427 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 73 bp overlap
FLI1 2 datasets
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 202 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 242 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 199 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 300 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 232 bp overlap
HNF4A 1 dataset
ChIP hiPSC GSE104613.HNF4A.hiPSC 141 bp overlap
IKZF1 1 dataset
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 237 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 122 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 344 bp overlap
JUN 2 datasets
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 227 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 263 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 213 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 316 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 386 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 201 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 399 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 216 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 94 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 305 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 256 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 268 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 124 bp overlap
NOTCH1 1 dataset
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 121 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_DMSO GSE104261.NOTCH3.TALL-1_DMSO 142 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 324 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 346 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 306 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 286 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 272 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF706IUS 427 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 248 bp overlap
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 106 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 302 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 190 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 232 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 161 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 241 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 148 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 277 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 197 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 372 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 278 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 290 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 165 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 157 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 229 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 283 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 206 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 251 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 264 bp overlap
RUNX1 2 datasets
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 301 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 182 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 232 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 190 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 327 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 158 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 207 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 113 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 407 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 381 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 391 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 390 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 329 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 237 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 427 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 312 bp overlap
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 153 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 125 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 231 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 204 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 165 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 186 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 277 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 282 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 182 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 255 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 205 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 311 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 293 bp overlap
STAT3 2 datasets
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 210 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 358 bp overlap
SUZ12 4 datasets
ChIP K-562 ENCSR000AUC.SUZ12.K-562 427 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 170 bp overlap
ChIP K562 ENCFF397TBJ 241 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 269 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 427 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 191 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 201 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 201 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 296 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 140 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 319 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 261 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 280 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 276 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 210 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 314 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 204 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 296 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 240 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 157 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 276 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 359 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 332 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 245 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap