chr2 : 67,927,348 – 67,927,837

489 bp 95 TFs 0 linked genes

This 489 bp open chromatin element has no linked target genes and is bound by 95 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

95 transcription factors

ASCL1 1 dataset

ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 114 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 379 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BARX2 1 dataset

Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap

BCL11A 2 datasets

ChIP WA01 ENCSR000BMJ.BCL11A.WA01 170 bp overlap

ChIP WA01 ENCSR000BIP.BCL11A.WA01 134 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 367 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 219 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 427 bp overlap

BHLHE22 1 dataset

ChIP CAL-1 GSE43876.BHLHE22.CAL-1 100 bp overlap

BRD4 1 dataset

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 395 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CDX2 1 dataset

ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 188 bp overlap

CHD4 1 dataset

ChIP RH5 GSE155861.CHD4.RH5 263 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Ddit3::Cebpa 1 dataset

Motif DE_12h DE_12h-Ddit3Cebpa_MA0019.2 10 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 108 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 165 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 124 bp overlap

GATA6 6 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 324 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 324 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 322 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 424 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 377 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 384 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

GLIS3 2 datasets

Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap

ChIP H9_plus GSE109562.GLIS3.H9_plus 489 bp overlap

HDAC2 2 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 163 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HMBOX1 1 dataset

Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap

HNF1A 1 dataset

Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap

HNF1B 1 dataset

Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

IRF4 2 datasets

ChIP NCI-H929 GSE142493.IRF4.NCI-H929 109 bp overlap

ChIP NCI-H929 GSE56857.IRF4.NCI-H929 109 bp overlap

JARID2 1 dataset

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 211 bp overlap

JUN 3 datasets

ChIP DE_D2 S02-DE-d2-JUN-exp1 355 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 308 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

Lhx3 1 dataset

Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 169 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 489 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 324 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 276 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 489 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 298 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 193 bp overlap

ChIP hESC GSE18292.NANOG.hESC 184 bp overlap

ChIP hESC GSE20650.NANOG.hESC 157 bp overlap

NEUROD1 2 datasets

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 437 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 64 bp overlap

NR6A1 1 dataset

Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap

NRIP1 1 dataset

ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

ONECUT1 1 dataset

Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap

ONECUT3 1 dataset

Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap

PAX3 1 dataset

Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU2F3 2 datasets

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 182 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F4 1 dataset

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU5F1 11 datasets

ChIP BG03 GSE21614.POU5F1.BG03 260 bp overlap

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 255 bp overlap

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP H1 ENCFF698ZAP 181 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 388 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 222 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 413 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 143 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 147 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 319 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 465 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RARA 2 datasets

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 198 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 278 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

REST 1 dataset

ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 129 bp overlap

RXRA 1 dataset

ChIP WA01 ENCSR000BJW.RXRA.WA01 131 bp overlap

SIX2 1 dataset

ChIP HEK GSE73865.SIX2.HEK 184 bp overlap

SMAD2-3 2 datasets

ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 317 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 275 bp overlap

SMAD3 2 datasets

ChIP BG03 GSE21614.SMAD3.BG03 165 bp overlap

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 305 bp overlap

SMARCA4 3 datasets

ChIP NSC GSE125033.SMARCA4.NSC 202 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 348 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 304 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 355 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 275 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 383 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 350 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 347 bp overlap

SOX2 3 datasets

ChIP RENVM GSE49404.SOX2.RENVM 135 bp overlap

ChIP hESC GSE18292.SOX2.hESC 95 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 254 bp overlap

SP1 2 datasets

Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 150 bp overlap

SP2 1 dataset

Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 437 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 193 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 352 bp overlap

TCF4 3 datasets

ChIP CAL-1 GSE76147.TCF4.CAL-1 77 bp overlap

ChIP GEN2-2 GSE76147.TCF4.GEN2-2 99 bp overlap

ChIP LS180_125 GSE31939.TCF4.LS180_125 126 bp overlap

USF1 3 datasets

ChIP H1 ENCFF090WVU 241 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 285 bp overlap

ChIP WTC11 ENCFF699QGS 403 bp overlap

USF2 1 dataset

ChIP WTC11 ENCFF139JAW 410 bp overlap

VENTX 1 dataset

Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 192 bp overlap

ZBTB24 1 dataset

Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap

ZKSCAN1 1 dataset

Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap

ZNF140 1 dataset

Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 287 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 308 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 143 bp overlap

ZNF740 1 dataset

Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap