chr22 : 28,736,360 28,736,647
287 bp 92 TFs 2 linked genes
This 287 bp open chromatin element is linked to CHEK2 and HSCB and is bound by 92 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CHEK2 5.2 kb Proximal Proximity
HSCB 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr22:28,731,360 – 28,741,647
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 287 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 280 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 173 bp overlap
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
BCOR 3 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 173 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 287 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 202 bp overlap
BRD4 2 datasets
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 283 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 254 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 147 bp overlap
CREB1 2 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 159 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 270 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 208 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 157 bp overlap
ESR2 1 dataset
Motif DE_24h DE_24h-ESR2_MA0258.2 15 bp overlap
ETS1 2 datasets
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 287 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 162 bp overlap
Elf5 1 dataset
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 175 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 287 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 127 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 134 bp overlap
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 287 bp overlap
ChIP DE DE-GATA4-2 287 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 287 bp overlap
ChIP DE DE-GATA6-2 287 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 287 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 286 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 287 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
HOXB4 1 dataset
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 287 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 258 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 279 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 287 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 219 bp overlap
KLF4 3 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 219 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 259 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 173 bp overlap
MSC 1 dataset
Motif DE_24h DE_24h-MSC_MA0665.1 10 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 118 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 287 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 232 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 287 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 287 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 186 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 287 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 287 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 287 bp overlap
ChIP hESC GSE20650.NANOG.hESC 223 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NKX6-1 1 dataset
Motif DE_24h DE_24h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_24h DE_24h-NKX6-3_MA1530.2 8 bp overlap
NR1D2 1 dataset
Motif DE_24h DE_24h-NR1D2_MA1532.2 15 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 79 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU5F1 17 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 287 bp overlap
ChIP GM23338 ENCFF333SNB 284 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 287 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 287 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 287 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 159 bp overlap
ChIP OSvK GSE81899.POU5F1.OSvK 207 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 166 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 249 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 282 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 177 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 287 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 287 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 282 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 185 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 287 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 287 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
PPARG 1 dataset
Motif DE_24h DE_24h-PPARG_MA0066.2 19 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 154 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 287 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 287 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 229 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 245 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 287 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 287 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 217 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 208 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 215 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 214 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 287 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 287 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 150 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 277 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 233 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 287 bp overlap
SOX2 3 datasets
ChIP OSvKM GSE81899.SOX2.OSvKM 256 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 287 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 151 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 249 bp overlap
SPIC 1 dataset
Motif DE_24h DE_24h-SPIC_MA0687.2 13 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 200 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 287 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 176 bp overlap
TBP 3 datasets
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 212 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 205 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 218 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 287 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 178 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 172 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Tcf21 1 dataset
Motif DE_24h DE_24h-Tcf21_MA0832.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 226 bp overlap
ZBTB7A 2 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 65 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 89 bp overlap
ZNF214 1 dataset
Motif DE_24h DE_24h-ZNF214_MA1975.2 13 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF528 1 dataset
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 166 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 132 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 71 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap