chr21 : 31,524,028 31,524,533
505 bp 76 TFs 3 linked genes
This 505 bp open chromatin element is linked to SOD1, TIAM1, and SCAF4 and is bound by 76 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SOD1 135.3 kb Distal Multiome
TIAM1 180.0 kb Distal Multiome
SCAF4 207.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr21:31,519,028 – 31,529,533
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
BRCA1 1 dataset
ChIP H1 ENCFF288NOI 301 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 193 bp overlap
CHD2 4 datasets
ChIP H1 ENCFF991MKH 132 bp overlap
ChIP K-562 ENCSR000EHD.CHD2.K-562 184 bp overlap
ChIP K562 ENCFF857WME 337 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 245 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 56 bp overlap
EGR1 6 datasets
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
Motif DE_48h DE_48h-EGR1_MA0162.5 10 bp overlap
Motif ES_0h ES_0h-EGR1_MA0162.5 10 bp overlap
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP HCT-116 ENCSR000BRZ.EGR1.HCT-116 157 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 115 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 289 bp overlap
EGR3 3 datasets
Motif DE_24h DE_24h-EGR3_MA0732.2 11 bp overlap
Motif DE_48h DE_48h-EGR3_MA0732.2 11 bp overlap
Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap
EGR4 3 datasets
Motif DE_24h DE_24h-EGR4_MA0733.2 11 bp overlap
Motif DE_48h DE_48h-EGR4_MA0733.2 11 bp overlap
Motif ES_0h ES_0h-EGR4_MA0733.2 11 bp overlap
EOMES 1 dataset
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
EP300 2 datasets
ChIP H1 ENCFF937OPV 205 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 255 bp overlap
FOXD2 2 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 2 datasets
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 183 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 505 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 505 bp overlap
HSF4 2 datasets
Motif DE_24h DE_24h-HSF4_MA0771.1 13 bp overlap
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 138 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 159 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 170 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 399 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 275 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 156 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCFF326EGX 487 bp overlap
KLF15 1 dataset
ChIP HEK293 GSE76494.KLF15.HEK293 174 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 213 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 434 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 329 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 188 bp overlap
MAZ 3 datasets
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 242 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 87 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 148 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
NR1D2 2 datasets
Motif DE_24h DE_24h-NR1D2_MA1532.2 15 bp overlap
Motif DE_48h DE_48h-NR1D2_MA1532.2 15 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 180 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 371 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
PATZ1 3 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 387 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 291 bp overlap
REST 5 datasets
ChIP H1 ENCFF203SWY 457 bp overlap
ChIP H1 ENCFF203SWY 257 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 288 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 230 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 250 bp overlap
RREB1 2 datasets
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 328 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 328 bp overlap
SP2 2 datasets
ChIP HEK293 ENCSR807LQP.SP2.HEK293 244 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 230 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 258 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 354 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 294 bp overlap
SP5 3 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAT3 4 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 298 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 241 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 343 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 353 bp overlap
TBR1 1 dataset
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX4 1 dataset
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 319 bp overlap
Wt1 3 datasets
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 311 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 371 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 237 bp overlap
ZNF143 2 datasets
Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF148 2 datasets
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 184 bp overlap
ZNF281 2 datasets
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 164 bp overlap
ZNF341 5 datasets
Motif DE_24h DE_24h-ZNF341_MA1655.2 8 bp overlap
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
ChIP HEK293 ENCFF944VMC 498 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 505 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 300 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 262 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 155 bp overlap
ZNF384 1 dataset
ChIP HEK293T ENCFF019DZX 142 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 213 bp overlap
ZNF561 3 datasets
ChIP HEK293 ENCFF399XKF 441 bp overlap
ChIP HEK293 ENCFF399XKF 256 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 386 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCFF854MGB 321 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 300 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 432 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 268 bp overlap
ZNF677 1 dataset
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
ZNF680 2 datasets
ChIP HEK293 ENCFF418WHE 365 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 310 bp overlap
ZNF740 3 datasets
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
Motif ES_0h ES_0h-ZNF740_MA0753.3 10 bp overlap
ZNF76 2 datasets
Motif DE_48h DE_48h-ZNF76_MA1716.2 17 bp overlap
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap