chr20 : 47,862,561 47,863,436
875 bp 89 TFs 2 linked genes
This 875 bp open chromatin element is linked to SULF2 and NCOA3 and is bound by 89 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SULF2 77.5 kb Distal Multiome
NCOA3 361.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:47,857,561 – 47,868,436
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 267 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 350 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 265 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 68 bp overlap
CBX1 3 datasets
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 348 bp overlap
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 188 bp overlap
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 54 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 108 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 215 bp overlap
DDX20 1 dataset
ChIP MCF-7 ENCFF142TOQ 245 bp overlap
DUX4 3 datasets
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 334 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 493 bp overlap
DUXA 1 dataset
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 359 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 144 bp overlap
ESR1 2 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 338 bp overlap
ChIP MCF-7_TAMR GSE86538.ESR1.MCF-7_TAMR 135 bp overlap
EWSR1 1 dataset
ChIP K-562 ENCSR142YYA.EWSR1.K-562 189 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 282 bp overlap
Elf5 1 dataset
Motif DE_72h DE_72h-Elf5_MA0136.4 8 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 362 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 238 bp overlap
ChIP DE DE-FOXA2-1 642 bp overlap
ChIP DE DE-FOXA2-2 676 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 148 bp overlap
GABPA 1 dataset
ChIP MCF-7 ENCFF951HFC 515 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 191 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 181 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 300 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 767 bp overlap
ChIP DE DE-GATA4-2 863 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 302 bp overlap
ChIP foregut GSE117136.GATA4.foregut 478 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 405 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 341 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 681 bp overlap
ChIP DE DE-GATA6-2 755 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 510 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 667 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 570 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 760 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 692 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 562 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 704 bp overlap
ChIP foregut GSE117136.GATA6.foregut 343 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 282 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 292 bp overlap
GTF2F1 1 dataset
ChIP MCF-7 ENCFF576OTX 133 bp overlap
HSF1 2 datasets
Motif DE_72h DE_72h-HSF1_MA0486.2 13 bp overlap
ChIP MCF-7 ENCFF586GQF 185 bp overlap
HSF2 1 dataset
Motif DE_72h DE_72h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif DE_72h DE_72h-HSF4_MA0771.1 13 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 208 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 287 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 374 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 233 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 166 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 149 bp overlap
MITF 6 datasets
ChIP 501-mel GSE137522.MITF.501-mel 153 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 81 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 174 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 133 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 131 bp overlap
ChIP K562 ENCFF731XJJ 160 bp overlap
MNT 1 dataset
ChIP MCF-7 ENCFF144ZFZ 306 bp overlap
MTA2 1 dataset
ChIP MCF-7 ENCFF342IDP 68 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 153 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 554 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 208 bp overlap
NBN 2 datasets
ChIP MCF-7 ENCFF608GKP 122 bp overlap
ChIP MCF-7 ENCFF608GKP 173 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 226 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 337 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NFXL1 2 datasets
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 229 bp overlap
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 369 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
OTX1 1 dataset
ChIP MCF-7 ENCFF645GYL 213 bp overlap
PHOX2A 1 dataset
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 445 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 182 bp overlap
POU2F3 1 dataset
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
POU5F1 1 dataset
Motif DE_72h DE_72h-POU5F1_MA1115.2 7 bp overlap
PPP1R10 1 dataset
ChIP MCF-7 ENCFF027ROL 351 bp overlap
PROP1 1 dataset
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 91 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 204 bp overlap
RFX1 1 dataset
ChIP K-562 ENCSR968GIB.RFX1.K-562 83 bp overlap
RFX5 1 dataset
ChIP MCF-7 ENCFF983ILY 173 bp overlap
RNF2 3 datasets
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 702 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 251 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 491 bp overlap
SETDB1 4 datasets
ChIP HEK293 ENCFF676PLV 717 bp overlap
ChIP HEK293 ENCFF676PLV 530 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 438 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 451 bp overlap
SIX4 1 dataset
ChIP MCF-7 ENCFF919BLX 109 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 815 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 438 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 801 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 618 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 156 bp overlap
SMARCA2 4 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 317 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 201 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 273 bp overlap
ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 287 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 297 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 327 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 415 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 524 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 727 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 485 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 276 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 537 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 595 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 199 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 218 bp overlap
TBX19 1 dataset
Motif DE_72h DE_72h-TBX19_MA0804.2 17 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 230 bp overlap
TBXT 1 dataset
Motif DE_72h DE_72h-TBXT_MA0009.2 16 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 233 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 233 bp overlap
TEF 1 dataset
Motif DE_72h DE_72h-TEF_MA0843.2 10 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 117 bp overlap
TOE1 1 dataset
ChIP MCF-7 ENCFF544WQF 75 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 295 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 258 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCFF379OSU 501 bp overlap
ZNF410 1 dataset
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF507 2 datasets
ChIP MCF-7 ENCFF080XWY 63 bp overlap
ChIP MCF-7 ENCFF080XWY 268 bp overlap
ZNF574 2 datasets
ChIP MCF-7 ENCFF293CGZ 397 bp overlap
ChIP MCF-7 ENCFF293CGZ 345 bp overlap
ZNF579 1 dataset
ChIP MCF-7 ENCFF550XRS 437 bp overlap
ZNF772 1 dataset
ChIP HepG2 ENCFF728OGE 537 bp overlap
ZSCAN4 1 dataset
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 244 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 210 bp overlap