chr20 : 24,470,620 24,471,592
972 bp 77 TFs 1 linked gene
This 972 bp open chromatin element is linked to SYNDIG1 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SYNDIG1 992 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:24,465,620 – 24,476,592
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 311 bp overlap
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 248 bp overlap
AR 3 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 221 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 244 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 233 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 153 bp overlap
BRD4 10 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 82 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 319 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 283 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 213 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 120 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 542 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 194 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 793 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 296 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 518 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 249 bp overlap
CDK9 3 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 278 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 239 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 503 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 413 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 166 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 177 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 121 bp overlap
CTCF 20 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 156 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 116 bp overlap
ChIP D721Med ENCFF513FYD 126 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 110 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 109 bp overlap
ChIP GM23338 ENCFF772DML 153 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 111 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 196 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 453 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 175 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 229 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 375 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 163 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 280 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 358 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 209 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF595WAL 166 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 307 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 421 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 112 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 199 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 186 bp overlap
EGR1 1 dataset
ChIP T-HESCs GSE141063.EGR1.T-HESCs 216 bp overlap
EHMT2 1 dataset
ChIP Rh41 GSE118666.EHMT2.Rh41 207 bp overlap
ERG 2 datasets
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 213 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 76 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 536 bp overlap
EZH2 33 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 344 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 429 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 878 bp overlap
ChIP A673 ENCFF790MVL 249 bp overlap
ChIP A673 ENCFF790MVL 505 bp overlap
ChIP A673 ENCFF955JRZ 249 bp overlap
ChIP A673 ENCFF955JRZ 505 bp overlap
ChIP A673 ENCFF955JRZ 637 bp overlap
ChIP GM23248 ENCFF404ZHM 95 bp overlap
ChIP GM23248 ENCFF404ZHM 353 bp overlap
ChIP GM23338 ENCFF613YON 202 bp overlap
ChIP H1 ENCFF232NZA 773 bp overlap
ChIP HepG2 ENCFF912EIW 417 bp overlap
ChIP HepG2 ENCFF912EIW 622 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 617 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 238 bp overlap
ChIP astrocyte ENCFF365JTP 266 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 71 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 179 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 287 bp overlap
ChIP fibroblast of lung ENCFF479BAW 269 bp overlap
ChIP hESC GSE113817.EZH2.hESC 284 bp overlap
ChIP keratinocyte ENCFF070STK 100 bp overlap
ChIP keratinocyte ENCFF070STK 301 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP myotube ENCFF857GWB 380 bp overlap
ChIP myotube ENCFF857GWB 471 bp overlap
ChIP neural cell ENCFF610EPB 67 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF472NFV 214 bp overlap
ChIP neural progenitor cell ENCFF472NFV 760 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 214 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 296 bp overlap
EZH2_phosphoT487 4 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 106 bp overlap
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 244 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 193 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 240 bp overlap
FLI1 1 dataset
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 104 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 125 bp overlap
GATA6 1 dataset
ChIP DE_D2 S55-DE-d2-GATA6-exp2 182 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 540 bp overlap
HDAC2 4 datasets
ChIP A-549 ENCSR659LJJ.HDAC2.A-549 112 bp overlap
ChIP A-549 ENCSR659LJJ.HDAC2.A-549 241 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 182 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 387 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 385 bp overlap
JARID2 4 datasets
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 296 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 574 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 290 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 607 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 290 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 701 bp overlap
KDM4C 2 datasets
ChIP SW1783 GSE92483.KDM4C.SW1783 264 bp overlap
ChIP SW1783 GSE92483.KDM4C.SW1783 333 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 282 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 941 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 396 bp overlap
MAX 4 datasets
ChIP Ishikawa ENCFF064TDQ 461 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 972 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 731 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 188 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 513 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 196 bp overlap
MED1 10 datasets
ChIP G296S GSE85628.MED1.G296S 234 bp overlap
ChIP G296S GSE85628.MED1.G296S 109 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 234 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 109 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 480 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 158 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 176 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 207 bp overlap
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 74 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 144 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 211 bp overlap
MYB 1 dataset
ChIP PF-382 GSE94000.MYB.PF-382 159 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 196 bp overlap
MYC 4 datasets
ChIP BE2C_SHCTR GSE70098.MYC.BE2C_SHCTR 618 bp overlap
ChIP BE2C_SHWDR5 GSE70098.MYC.BE2C_SHWDR5 293 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 491 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 606 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 290 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 137 bp overlap
NRF1 2 datasets
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 191 bp overlap
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 171 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 293 bp overlap
ChIP HEK293 GSE89017.OGG1.HEK293 293 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 378 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 469 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 363 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 251 bp overlap
POU5F1 6 datasets
ChIP BG03 GSE21614.POU5F1.BG03 303 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 450 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 341 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 378 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 228 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 210 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 367 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 346 bp overlap
RAD21 3 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 523 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 124 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 346 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 126 bp overlap
RNF2 6 datasets
ChIP H1 ENCFF239FFS 564 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 120 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 235 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 960 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 204 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 478 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 268 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 956 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 521 bp overlap
ChIP H1 ENCFF896IJG 186 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 82 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 305 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 178 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 174 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 128 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 468 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 447 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 348 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 474 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 427 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 383 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 132 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 268 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 66 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 353 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 142 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 544 bp overlap
SUZ12 4 datasets
ChIP H1 ENCFF881NFR 767 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 221 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 125 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 254 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 58 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 58 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 352 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 352 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 122 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 185 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 322 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 411 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 165 bp overlap
ChIP U2OS GSE96776.ZBTB48.U2OS 544 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 686 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 171 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 206 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 252 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 126 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap
ZNF76 1 dataset
ChIP HEK293 ENCFF374TCG 195 bp overlap