chr17 : 75,041,736 75,042,280
544 bp 108 TFs 3 linked genes
This 544 bp open chromatin element is linked to RN7SL573P, ATP5PD, and KCTD2 and is bound by 108 transcription factors.
Linked Genes
3 genes
Distance
Gene Expression Dist. to TSS Distance Link type
RN7SL573P at TSS At TSS Proximity
ATP5PD 4.7 kb Proximal Proximity
KCTD2 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:75,036,736 – 75,047,280
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_24h DE_24h-ALX3_MA0634.2 6 bp overlap
BRD2 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD2.MV4-11_DMSO 144 bp overlap
BRD4 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 164 bp overlap
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 219 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 167 bp overlap
ChIP BLaER1 ENCFF364PUR 63 bp overlap
DMRTA1 1 dataset
Motif DE_24h DE_24h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
DRGX 1 dataset
Motif DE_24h DE_24h-DRGX_MA1481.2 6 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
EMX1 1 dataset
Motif DE_24h DE_24h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_24h DE_24h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_24h DE_24h-EN1_MA0027.3 6 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 292 bp overlap
EVX1 1 dataset
Motif DE_24h DE_24h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_24h DE_24h-EVX2_MA0888.2 6 bp overlap
Elf5 1 dataset
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-2 280 bp overlap
Motif DE_24h DE_24h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_24h DE_24h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
FOXI1 1 dataset
Motif DE_24h DE_24h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_24h DE_24h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_24h DE_24h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_24h DE_24h-FOXS1_MA2118.1 8 bp overlap
Foxl2 1 dataset
Motif DE_24h DE_24h-Foxl2_MA1607.2 10 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 273 bp overlap
GSX1 1 dataset
Motif DE_24h DE_24h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_24h DE_24h-GSX2_MA0893.3 7 bp overlap
HOXA1 1 dataset
Motif DE_24h DE_24h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_24h DE_24h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_24h DE_24h-HOXA3_MA2119.1 7 bp overlap
HOXA6 1 dataset
Motif DE_24h DE_24h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif DE_24h DE_24h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_24h DE_24h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_24h DE_24h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_24h DE_24h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif DE_24h DE_24h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_24h DE_24h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_24h DE_24h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif DE_24h DE_24h-HOXC8_MA1505.2 6 bp overlap
HOXD8 1 dataset
Motif DE_24h DE_24h-HOXD8_MA0910.3 7 bp overlap
IKZF1 1 dataset
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
ISX 1 dataset
Motif DE_24h DE_24h-ISX_MA0654.2 6 bp overlap
LHX5 1 dataset
Motif DE_24h DE_24h-LHX5_MA1519.2 7 bp overlap
Lhx4 1 dataset
Motif DE_24h DE_24h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_24h DE_24h-Lhx8_MA0705.2 6 bp overlap
MAF 1 dataset
Motif DE_24h DE_24h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_24h DE_24h-MAFA_MA1521.2 13 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 176 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 147 bp overlap
MEF2A 1 dataset
Motif DE_24h DE_24h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_24h DE_24h-MEF2B_MA0660.1 12 bp overlap
MEF2D 1 dataset
Motif DE_24h DE_24h-MEF2D_MA0773.1 12 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
MEOX1 1 dataset
Motif DE_24h DE_24h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_24h DE_24h-MEOX2_MA0706.2 7 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
MIXL1 1 dataset
Motif DE_24h DE_24h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_24h DE_24h-MNX1_MA0707.3 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 330 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 259 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 211 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 172 bp overlap
NKX6-2 1 dataset
Motif DE_24h DE_24h-NKX6-2_MA0675.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_24h DE_24h-Nr2e3_MA0164.2 6 bp overlap
PDX1 1 dataset
Motif DE_24h DE_24h-PDX1_MA0132.3 6 bp overlap
POLR2A 1 dataset
ChIP HepG2 ENCFF252NAR 285 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 456 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 481 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA0628.2 6 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 233 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
PRRX1 1 dataset
Motif DE_24h DE_24h-PRRX1_MA0716.2 6 bp overlap
RAX2 1 dataset
Motif DE_24h DE_24h-RAX2_MA0717.2 6 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF939HTZ 476 bp overlap
Runx1 1 dataset
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
SHOX 1 dataset
Motif DE_24h DE_24h-SHOX_MA0630.2 6 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 320 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 131 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 361 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 341 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 296 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 438 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 544 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
Shox2 1 dataset
Motif DE_24h DE_24h-Shox2_MA0720.2 6 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 204 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 257 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TEAD1 1 dataset
Motif DE_24h DE_24h-TEAD1_MA0090.4 9 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 492 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 461 bp overlap
TLX2 1 dataset
Motif DE_24h DE_24h-TLX2_MA1577.2 6 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
UNCX 1 dataset
Motif DE_24h DE_24h-UNCX_MA0721.2 6 bp overlap
VAX2 1 dataset
Motif DE_24h DE_24h-VAX2_MA0723.3 6 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 228 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZNF189 1 dataset
Motif DE_24h DE_24h-ZNF189_MA1725.2 9 bp overlap
ZNF547 1 dataset
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
ZNF667 1 dataset
Motif DE_24h DE_24h-ZNF667_MA1984.2 11 bp overlap
ZSCAN16 1 dataset
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap
Zic2 1 dataset
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
mix-a 1 dataset
Motif DE_24h DE_24h-mix-a_MA0621.2 7 bp overlap