Predicted to enable cullin family protein binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for KCTD2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = KCTD2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of KCTD2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr17:74,748,109–74,749,683 | 298.7 kb | Distal (>10kb) Multiome | 915 | |
| chr17:74,775,871–74,776,940 | 270.8 kb | Distal (>10kb) Multiome | 798 | |
| chr17:74,842,511–74,843,541 | 204.2 kb | Distal (>10kb) Multiome | 412 | |
| chr17:74,852,259–74,853,211 | 194.6 kb | Distal (>10kb) Multiome | 435 | |
| chr17:74,872,506–74,873,926 | 174.0 kb | Distal (>10kb) Multiome | 1008 | |
| chr17:74,893,600–74,894,183 | 153.4 kb | Distal (>10kb) Multiome | 189 | |
| chr17:74,923,198–74,923,804 | 123.6 kb | Distal (>10kb) Multiome | 543 | |
| chr17:74,972,019–74,973,116 | 74.4 kb | Distal (>10kb) Multiome | 607 | |
| chr17:74,982,006–74,982,936 | 64.8 kb | Distal (>10kb) Multiome | 952 | |
| chr17:74,987,081–74,988,770 | 59.6 kb | Distal (>10kb) Multiome | 702 | |
| chr17:75,012,158–75,013,285 | 34.4 kb | Distal (>10kb) Multiome | 1058 | |
| chr17:75,033,550–75,035,757 | 12.1 kb | Distal (>10kb) Multiome | 1228 | |
| chr17:75,041,736–75,042,280 | 4.9 kb | Proximal (<10kb) | 108 | |
| chr17:75,044,818–75,045,656 | 1.5 kb | Proximal (<10kb) | 154 | |
| chr17:75,046,451–75,047,855 | 105 bp | At TSS Multiome | 961 | |
| chr17:75,087,344–75,088,429 | 40.6 kb | Distal (>10kb) Multiome | 717 | |
| chr17:75,089,013–75,089,866 | 42.2 kb | Distal (>10kb) Multiome | 406 | |
| chr17:75,104,838–75,106,094 | 58.6 kb | Distal (>10kb) Multiome | 454 | |
| chr17:75,109,401–75,110,734 | 62.7 kb | Distal (>10kb) Multiome | 762 | |
| chr17:75,113,757–75,114,535 | 67.0 kb | Distal (>10kb) Multiome | 585 | |
| chr17:75,130,577–75,132,090 | 84.5 kb | Distal (>10kb) Multiome | 990 | |
| chr17:75,153,354–75,155,273 | 107.4 kb | Distal (>10kb) Multiome | 993 | |
| chr17:75,182,199–75,183,441 | 135.8 kb | Distal (>10kb) Multiome | 908 | |
| chr17:75,205,060–75,205,995 | 158.3 kb | Distal (>10kb) Multiome | 975 | |
| chr17:75,240,373–75,240,941 | 193.5 kb | Distal (>10kb) Multiome | 436 | |
| chr17:75,261,304–75,262,404 | 214.5 kb | Distal (>10kb) Multiome | 983 | |
| chr17:75,270,231–75,271,942 | 224.1 kb | Distal (>10kb) Multiome | 946 | |
| chr17:75,288,761–75,289,874 | 242.3 kb | Distal (>10kb) Multiome | 941 | |
| chr17:75,346,809–75,347,324 | 300.0 kb | Distal (>10kb) Multiome | 265 |
Genomic view of the KCTD2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.