chr17 : 71,398,674 71,399,259
585 bp 98 TFs 0 linked genes
This 585 bp open chromatin element has no linked target genes and is bound by 98 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:71,393,674 – 71,404,259
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
ARNT 2 datasets
ChIP HEK293T ENCFF302BEZ 299 bp overlap
ChIP HEK293T ENCSR760UKJ.ARNT.HEK293T 457 bp overlap
BRD4 1 dataset
ChIP HEK293T GSE39579.BRD4.HEK293T 248 bp overlap
CDX2 1 dataset
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 84 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 509 bp overlap
CHD8 1 dataset
ChIP T-47D_R5020_45 GSE62428.CHD8.T-47D_R5020_45 159 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 185 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 585 bp overlap
CTCF 8 datasets
ChIP AG10803 ENCFF549AQK 257 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 297 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 145 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 130 bp overlap
ChIP myotube ENCFF981UHL 371 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 194 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 272 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 543 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 571 bp overlap
ChIP neural cell ENCFF442QNK 183 bp overlap
ESR1 2 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 130 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 69 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 302 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 295 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 366 bp overlap
ChIP DE DE-FOXA2-2 547 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 585 bp overlap
ChIP DE DE-GATA4-2 585 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 585 bp overlap
ChIP DE DE-GATA6-2 585 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 385 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 449 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 585 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 571 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 433 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 571 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HNF4A 2 datasets
Motif DE_60h DE_60h-HNF4A_MA0114.5 9 bp overlap
Motif DE_60h DE_60h-HNF4A_MA1494.2 14 bp overlap
HNF4G 1 dataset
Motif DE_60h DE_60h-HNF4G_MA0484.3 9 bp overlap
HOXC12 1 dataset
Motif DE_60h DE_60h-HOXC12_MA0906.2 10 bp overlap
HOXD11 1 dataset
Motif DE_60h DE_60h-HOXD11_MA0908.2 9 bp overlap
Hmx3 1 dataset
Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap
ISL2 1 dataset
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
KLF17 1 dataset
Motif DE_60h DE_60h-KLF17_MA1514.2 14 bp overlap
LEF1 1 dataset
ChIP HEK293T ENCFF869LPS 351 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 266 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_60h DE_60h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
MYB 1 dataset
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYCN 3 datasets
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 468 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 233 bp overlap
ChIP SHEP-21N_DOX_24H GSE80151.MYCN.SHEP-21N_DOX_24H 237 bp overlap
MYF6 1 dataset
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 367 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 319 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 486 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 171 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 175 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 585 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 162 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 164 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 218 bp overlap
Nkx3-1 1 dataset
Motif DE_60h DE_60h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_60h DE_60h-Nkx3-2_MA0122.4 10 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
PDX1 4 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 301 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
ChIP islet ERP001456.PDX1.islet 160 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 336 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 324 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 585 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 585 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
PPARG 1 dataset
ChIP SGBS GSE41629.PPARG.SGBS 344 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 340 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 243 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 250 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 330 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 489 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 489 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Rhox11 1 dataset
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 210 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 66 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 388 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 152 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 220 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 585 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 525 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 392 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 383 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 388 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 239 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 585 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 585 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 240 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 174 bp overlap
SMARCA2 5 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 192 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 305 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 328 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 470 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 488 bp overlap
SMARCA4 8 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 533 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 490 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 497 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 585 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 296 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 444 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 458 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 207 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 238 bp overlap
SMARCC1 4 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 195 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 408 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 447 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 235 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 288 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 262 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 536 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 583 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 274 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 186 bp overlap
TEAD1 2 datasets
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 149 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 287 bp overlap
TEAD4 4 datasets
ChIP H1 ENCFF778PAX 78 bp overlap
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 263 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 337 bp overlap
ChIP MKN28 GSE44416.TEAD4.MKN28 171 bp overlap
TWIST1 4 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 585 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 568 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 570 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 585 bp overlap
USP7 1 dataset
ChIP HEK293T GSE61048.USP7.HEK293T 168 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 418 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 455 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 221 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 241 bp overlap
YY2 1 dataset
ChIP HeLa GSE76856.YY2.HeLa 125 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 384 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ZNF211 1 dataset
Motif DE_60h DE_60h-ZNF211_MA1974.2 10 bp overlap
ZNF331 1 dataset
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 181 bp overlap
ZNF425 1 dataset
ChIP HEK293T GSE78099.ZNF425.HEK293T 142 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 245 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 188 bp overlap
Zfp335 2 datasets
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap