chr1 : 244,234,067 244,234,652
585 bp 80 TFs 0 linked genes
This 585 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:244,229,067 – 244,239,652
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 4 datasets
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 189 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 154 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 193 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 149 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 248 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 261 bp overlap
BRD4 1 dataset
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 134 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 441 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 284 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
CTCF 59 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 241 bp overlap
ChIP A673 ENCFF123WOM 342 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 186 bp overlap
ChIP BE2C ENCFF757SRF 263 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 181 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DND-41 ENCFF913MRA 249 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 181 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 246 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 155 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 140 bp overlap
ChIP GM12878 ENCFF511URZ 203 bp overlap
ChIP GM23338 ENCFF531QOI 355 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 247 bp overlap
ChIP H9 ENCFF152GTF 254 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 179 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 207 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 205 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 204 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 259 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 103 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 249 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 209 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 157 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 171 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 150 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 144 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 97 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 146 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 102 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 165 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 339 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF111MGE 225 bp overlap
ChIP K562 ENCFF430KTH 299 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 198 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 120 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 209 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 144 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 174 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 218 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 193 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 307 bp overlap
ChIP endodermal cell ENCFF471YCZ 255 bp overlap
ChIP gastrocnemius medialis ENCFF071DIF 337 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 275 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 216 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 336 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 167 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 182 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 162 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 189 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 191 bp overlap
ChIP neural progenitor cell ENCFF420RBO 149 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 243 bp overlap
ChIP psoas muscle ENCFF305ZVF 348 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF460KDD 254 bp overlap
ChIP BLaER1 ENCFF896HSY 262 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
EP300 1 dataset
ChIP AML GSE131939.EP300.AML 160 bp overlap
ERG 3 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 282 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 144 bp overlap
ESR1 1 dataset
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EZH2 2 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 535 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 261 bp overlap
Foxn1 1 dataset
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
GLIS1 1 dataset
Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap
GLIS3 1 dataset
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 116 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 151 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 270 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 272 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 585 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 219 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 193 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 76 bp overlap
KMT2A 1 dataset
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 250 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 179 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 233 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 137 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 505 bp overlap
MZF1 2 datasets
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
ChIP HEK293 ENCFF683ZWN 421 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 178 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 302 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 134 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 2 datasets
ChIP gastrocnemius medialis ENCFF081DTE 393 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 418 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 223 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 99 bp overlap
ChIP H1 ENCFF967OJF 241 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 88 bp overlap
ChIP K562 ENCFF634XYR 281 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 174 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
RB1 1 dataset
ChIP K-562 ENCSR506CVF.RB1.K-562 119 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 311 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 387 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 396 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 481 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 316 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 528 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 387 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 303 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 414 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 146 bp overlap
SMARCA4 1 dataset
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 279 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 152 bp overlap
SUZ12 1 dataset
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 398 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 470 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR695EQB.ZNF24.K-562 246 bp overlap
ChIP K-562 ENCSR117WTM.ZNF24.K-562 204 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 150 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap