chr15:69,059,802–69,060,199

chr15 : 69,059,802 – 69,060,199

397 bp 71 TFs 6 linked genes

This 397 bp open chromatin element is linked to 6 target genes and is bound by 71 transcription factors.

Linked Genes

6 genes

Gene	Expression	Dist. to TSS	Distance	Link type
GLCE		100.5 kb	Distal	Multiome+HiCAR
PAQR5		238.9 kb	Distal	Multiome+HiCAR
ANP32A		239.2 kb	Distal	Multiome
SPESP1		241.9 kb	Distal	Multiome
KIF23		354.2 kb	Distal	Multiome+HiCAR
RPLP1		392.7 kb	Distal	Multiome+HiCAR

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

71 transcription factors

ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 94 bp overlap

ChIP K-562 ENCSR091GVJ.ATF1.K-562 66 bp overlap

BCL11A 1 dataset

ChIP HUDEP-2_BCL11A-ER-V5 GSE103445.BCL11A.HUDEP-2_BCL11A-ER-V5 135 bp overlap

ChIP HepG2 ENCFF423EJH 76 bp overlap

BHLHE40 4 datasets

ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 162 bp overlap

ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 238 bp overlap

ChIP HepG2 ENCFF961RID 209 bp overlap

ChIP K-562 ENCSR000EGV.BHLHE40.K-562 132 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 284 bp overlap

ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 86 bp overlap

CBFA2T3 1 dataset

ChIP K562 ENCFF673OEZ 234 bp overlap

CHD2 3 datasets

ChIP SK-N-SH ENCFF669KMB 141 bp overlap

ChIP SK-N-SH ENCFF669KMB 347 bp overlap

ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 207 bp overlap

CREB1 1 dataset

ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 108 bp overlap

CTCF 14 datasets

ChIP A-549 ENCSR000DPF.CTCF.A-549 99 bp overlap

ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 214 bp overlap

ChIP Peyer's patch ENCFF828IDE 285 bp overlap

ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 173 bp overlap

ChIP RH4 GSE83726.CTCF.RH4 130 bp overlap

ChIP RWPE2 ENCFF911IEE 50 bp overlap

ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 302 bp overlap

ChIP adrenal-gland ENCSR899JSO.CTCF.adrenal-gland 397 bp overlap

ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 54 bp overlap

ChIP erythroid GSE67783.CTCF.erythroid 397 bp overlap

ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 116 bp overlap

ChIP hESC_D7 GSE116862.CTCF.hESC_D7 226 bp overlap

ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 135 bp overlap

ChIP lymphoblast GSE155324.CTCF.lymphoblast 98 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 159 bp overlap

EP300 2 datasets

ChIP SK-N-SH ENCFF829RWA 174 bp overlap

ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 94 bp overlap

ESR1 2 datasets

ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 230 bp overlap

ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 80 bp overlap

ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 172 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 215 bp overlap

FOXJ3 1 dataset

ChIP SK-N-SH ENCFF124KVL 177 bp overlap

GATA1 4 datasets

ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 56 bp overlap

ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 57 bp overlap

ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 98 bp overlap

ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 260 bp overlap

GATA2 5 datasets

ChIP SH-SY5Y ENCFF485YIB 220 bp overlap

ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 179 bp overlap

ChIP SK-N-SH ENCFF764OZD 141 bp overlap

ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 121 bp overlap

ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 86 bp overlap

GATA6 2 datasets

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 247 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 239 bp overlap

HAND2 1 dataset

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 185 bp overlap

HDAC8 1 dataset

ChIP K-562 ENCSR835TCD.HDAC8.K-562 158 bp overlap

HMGXB4 2 datasets

ChIP WTC11 ENCFF962POR 110 bp overlap

ChIP WTC11 ENCFF962POR 314 bp overlap

HNRNPL 1 dataset

ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 114 bp overlap

ChIP K-562 ENCSR005NMT.ID3.K-562 334 bp overlap

ChIP Karpas-299 GSE151413.JUN.Karpas-299 376 bp overlap

ChIP HEP GSE52637.LDB1.HEP 101 bp overlap

ChIP liver ENCFF584QGB 73 bp overlap

ChIP G296S_4 GSE85628.MED1.G296S_4 149 bp overlap

MXI1 2 datasets

ChIP SK-N-SH ENCFF746HVJ 95 bp overlap

ChIP SK-N-SH ENCFF746HVJ 312 bp overlap

ChIP NB69 GSE138295.MYC.NB69 160 bp overlap

ChIP SK-N-AS GSE138295.MYC.SK-N-AS 66 bp overlap

MYCN 3 datasets

ChIP BE2C GSE80151.MYCN.BE2C 183 bp overlap

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 397 bp overlap

ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 183 bp overlap

MYOD1 2 datasets

ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 353 bp overlap

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 74 bp overlap

NELFE 2 datasets

ChIP K-562_HS GSE112379.NELFE.K-562_HS 100 bp overlap

ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 121 bp overlap

NEUROG2 5 datasets

ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 186 bp overlap

ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 130 bp overlap

ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 93 bp overlap

ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 83 bp overlap

ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 83 bp overlap

NFE2L2 1 dataset

ChIP A-549 GSE113497.NFE2L2.A-549 119 bp overlap

NFIB 2 datasets

ChIP MCF-7 ENCFF925CGH 117 bp overlap

ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 55 bp overlap

NFKBIZ 1 dataset

ChIP Hep-G2 ENCSR235OVI.NFKBIZ.Hep-G2 127 bp overlap

NIPBL 1 dataset

ChIP GP5D GSE51234.NIPBL.GP5D 289 bp overlap

NR2E3 1 dataset

ChIP A549 ENCFF833WDR 103 bp overlap

NR2F2 1 dataset

ChIP hiPSC GSE81585.NR2F2.hiPSC 123 bp overlap

ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 66 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 259 bp overlap

POU5F1 2 datasets

ChIP BG03 GSE21614.POU5F1.BG03 97 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 397 bp overlap

RAD21 6 datasets

ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 133 bp overlap

ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 132 bp overlap

ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 183 bp overlap

ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 142 bp overlap

ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 120 bp overlap

ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 140 bp overlap

RBM39 1 dataset

ChIP Hep-G2 GSE120104.RBM39.Hep-G2 79 bp overlap

RCOR1 2 datasets

ChIP SK-N-SH ENCFF518EXB 197 bp overlap

ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 296 bp overlap

RREB1 1 dataset

ChIP K-562 ENCSR250WFW.RREB1.K-562 161 bp overlap

ChIP liver ENCFF807CIA 68 bp overlap

SCRT2 1 dataset

ChIP HEK293 ENCFF711QQB 209 bp overlap

SMC1 3 datasets

ChIP DKO GSE131606.SMC1.DKO 113 bp overlap

ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 385 bp overlap

ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 100 bp overlap

SMC1A 1 dataset

ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 56 bp overlap

ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 90 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 256 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 353 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 60 bp overlap

ChIP liver ENCFF597LFJ 90 bp overlap

ChIP liver ENCFF769YSM 93 bp overlap

ChIP HepG2 ENCFF865DSQ 100 bp overlap

STAG2 1 dataset

ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 53 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 69 bp overlap

ChIP SK-N-SH ENCFF270OWF 124 bp overlap

TEAD3 1 dataset

ChIP HepG2 ENCFF054UUL 144 bp overlap

ChIP A549 ENCFF229ULU 243 bp overlap

TWIST1 2 datasets

ChIP BE2C GSE80151.TWIST1.BE2C 397 bp overlap

ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 397 bp overlap

ZBTB42 3 datasets

ChIP HEK293 GSE76494.ZBTB42.HEK293 80 bp overlap

ChIP HepG2 ENCFF153JWK 240 bp overlap

ChIP HepG2 ENCFF153JWK 396 bp overlap

ZMYM3 1 dataset

ChIP HepG2 ENCFF408KTI 97 bp overlap

ZNF501 1 dataset

ChIP HepG2 ENCFF879XZR 97 bp overlap

ZNF548 1 dataset

ChIP HEK293 ENCFF762PDF 225 bp overlap

ZNF550 1 dataset

ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 202 bp overlap

ZNF691 2 datasets

ChIP HepG2 ENCFF427OHT 106 bp overlap

ChIP HepG2 ENCFF427OHT 367 bp overlap

ZNF711 1 dataset

ChIP HEK293T GSE145160.ZNF711.HEK293T 139 bp overlap