chr13 : 35,984,744 35,985,752
1,008 bp 84 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 84 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:35,979,744 – 35,990,752
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 219 bp overlap
ASCL1 4 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 120 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 180 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 113 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 185 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 503 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 230 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 450 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 343 bp overlap
BMI1 2 datasets
ChIP GM12878 ENCSR469WII.BMI1.GM12878 317 bp overlap
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 280 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 425 bp overlap
BRD4 9 datasets
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 240 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 369 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 289 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 275 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 672 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 722 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 611 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 1007 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 373 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 158 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 262 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 391 bp overlap
CTCF 2 datasets
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 242 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 183 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 172 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 192 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 981 bp overlap
ChIP neural cell ENCFF442QNK 585 bp overlap
ChIP neural cell ENCFF442QNK 597 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 208 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 190 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 224 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 260 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 725 bp overlap
ChIP DE DE-FOXA2-2 719 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 247 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 293 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 464 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 303 bp overlap
ChIP DE DE-GATA4-2 344 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 366 bp overlap
ChIP DE DE-GATA6-2 366 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 417 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 291 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 229 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 393 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 411 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 207 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 205 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 279 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 410 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 345 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 306 bp overlap
MAX 4 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 194 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 219 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 513 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 175 bp overlap
MED1 1 dataset
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 139 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 212 bp overlap
MXI1 5 datasets
ChIP SK-N-SH ENCFF746HVJ 491 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 402 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 407 bp overlap
ChIP neural cell ENCFF623HQN 537 bp overlap
ChIP neural cell ENCFF623HQN 605 bp overlap
MYC 3 datasets
ChIP NB69 GSE138295.MYC.NB69 282 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 201 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 199 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 278 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 181 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 371 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 176 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 383 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 352 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 387 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 278 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 268 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 228 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 216 bp overlap
PDX1 2 datasets
ChIP islet ERP001456.PDX1.islet 190 bp overlap
ChIP islet ERP001456.PDX1.islet 188 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 566 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 283 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 425 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 262 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 194 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 587 bp overlap
ChIP neural cell ENCFF564MOT 279 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 173 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 391 bp overlap
REST 4 datasets
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 165 bp overlap
ChIP neural ENCSR000BTV.REST.neural 637 bp overlap
ChIP neural cell ENCFF882LXX 394 bp overlap
RFX1 7 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 412 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 244 bp overlap
ChIP K562 ENCFF421AVO 465 bp overlap
ChIP MCF-7 ENCFF782EZS 441 bp overlap
ChIP MCF-7 ENCFF973QAD 308 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 407 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 348 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCFF755HLO 341 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 192 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 196 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 538 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 385 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 316 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 442 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 600 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 374 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 519 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 211 bp overlap
SMARCA4 8 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 180 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 199 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 240 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 201 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 302 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 533 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 280 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 391 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 357 bp overlap
ChIP neural cell ENCFF795YGY 443 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 408 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 640 bp overlap
SOX2 2 datasets
ChIP H9 GSE46837.SOX2.H9 260 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 511 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 580 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 210 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 191 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 236 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 231 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 199 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 413 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 144 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 417 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 202 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 202 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 266 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 631 bp overlap
ChIP HEK293 ENCFF865LIO 631 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 413 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 266 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 315 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 218 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 186 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 897 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 295 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 224 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 269 bp overlap
ZNF423 2 datasets
ChIP HEK293 ENCFF937QHI 357 bp overlap
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 268 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 146 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 227 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 356 bp overlap