chr12 : 113,609,843 113,610,459
616 bp 80 TFs 5 linked genes
This 616 bp open chromatin element is linked to 5 target genes and is bound by 80 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
LHX5-AS1 131.6 kb Distal Multiome
LHX5 138.3 kb Distal Multiome
LINC01234 163.5 kb Distal Multiome
PLBD2 251.6 kb Distal Multiome
SLC8B1 275.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:113,604,843 – 113,615,459
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 582 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 234 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 77 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 365 bp overlap
ATF2 4 datasets
ChIP H1 ENCFF295GZO 391 bp overlap
ChIP H1 ENCFF295GZO 179 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 134 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 137 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 559 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 616 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 145 bp overlap
CDK6 1 dataset
ChIP KB GSE52469.CDK6.KB 76 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 260 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 295 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 137 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 209 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 398 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 340 bp overlap
ChIP hESC GSE17917.EP300.hESC 440 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 326 bp overlap
ESR1 1 dataset
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 138 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 410 bp overlap
EZH2 13 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 81 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 102 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 228 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 366 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 243 bp overlap
ChIP T98G GSE112240.EZH2.T98G 207 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 133 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 52 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 54 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 229 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 213 bp overlap
ChIP neural progenitor cell ENCFF018MKA 536 bp overlap
ChIP neural progenitor cell ENCFF472NFV 566 bp overlap
EZH2_phosphoT487 4 datasets
ChIP HCT-116 ENCSR429CLV.EZH2_phosphoT487.HCT-116 290 bp overlap
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 232 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 201 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 456 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 341 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 113 bp overlap
GLIS3 2 datasets
ChIP H9_plus GSE109562.GLIS3.H9_plus 230 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 154 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 157 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 313 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 150 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 345 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 115 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 219 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 138 bp overlap
JUN 3 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 371 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 129 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 398 bp overlap
KLF4 4 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 198 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 308 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 240 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 556 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 549 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 295 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 205 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 616 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 221 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 616 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 599 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 547 bp overlap
ChIP hESC GSE18292.NANOG.hESC 325 bp overlap
ChIP hESC GSE20650.NANOG.hESC 202 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 94 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 374 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 541 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 271 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 384 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 411 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 219 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 227 bp overlap
POU5F1 12 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 392 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 616 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 160 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 375 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 405 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 222 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 371 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 594 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 304 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 297 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 114 bp overlap
RAD21 9 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 616 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 411 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 565 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 347 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 503 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 493 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 133 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 150 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 356 bp overlap
REST 2 datasets
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 177 bp overlap
RNF2 3 datasets
ChIP WA01 GSE104690.RNF2.WA01 353 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 616 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 386 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 228 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 266 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 281 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 325 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 162 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 573 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 139 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 224 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 550 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 484 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 495 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 286 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 600 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 401 bp overlap
SMC1 1 dataset
ChIP HAP1 GSE94992.SMC1.HAP1 419 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 435 bp overlap
ChIP hESC GSE18292.SOX2.hESC 149 bp overlap
ChIP hESC GSE69479.SOX2.hESC 375 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 447 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 395 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 477 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 368 bp overlap
SUZ12 4 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 354 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 300 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 349 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 272 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 151 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 165 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 114 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 344 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 210 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 616 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 578 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 338 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 137 bp overlap
TWIST1 1 dataset
Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap
Thap11 1 dataset
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 401 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 383 bp overlap
ZNF140 1 dataset
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 290 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 616 bp overlap
ZNF281 2 datasets
ChIP K-562 GSE121133.ZNF281.K-562 275 bp overlap
ChIP K-562 GSE121133.ZNF281.K-562 221 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 107 bp overlap
ZNF528 1 dataset
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap