chr12 : 99,609,554 99,610,072
518 bp 79 TFs 0 linked genes
This 518 bp open chromatin element has no linked target genes and is bound by 79 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:99,604,554 – 99,615,072
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 197 bp overlap
AR 3 datasets
ChIP MCF-7 ERP001226.AR.MCF-7 225 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 177 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 107 bp overlap
ARID1A 6 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 430 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 518 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 406 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 518 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 518 bp overlap
ChIP MCF-7_estrogen GSE123284.ARID1A.MCF-7_estrogen 302 bp overlap
ARID2 1 dataset
ChIP MCF-7_parental GSE123284.ARID2.MCF-7_parental 290 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 409 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 176 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 175 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 158 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 327 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 268 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 172 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 95 bp overlap
ESR1 34 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 211 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 225 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 211 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 276 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 228 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 440 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 320 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 232 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 228 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 230 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 228 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 227 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 329 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 350 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 160 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 236 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 440 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 488 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 221 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 282 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 409 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 452 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 318 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 335 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 479 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 148 bp overlap
ChIP MCF-7_shCtrl_TamR GSE128445.ESR1.MCF-7_shCtrl_TamR 287 bp overlap
ChIP MCF-7_shFbxo_E2_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_SRC-3 285 bp overlap
ChIP MCF-7_shFbxo_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_SRC-3 285 bp overlap
ChIP MCF-7_shKMT2C GSE100328.ESR1.MCF-7_shKMT2C 178 bp overlap
ChIP MCF-7_shKMT2C_R GSE100328.ESR1.MCF-7_shKMT2C_R 304 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 223 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 231 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 251 bp overlap
ESRRA 1 dataset
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 390 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 144 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 423 bp overlap
FOXA1 28 datasets
ChIP MCF-7 ERP001226.FOXA1.MCF-7 318 bp overlap
ChIP MCF-7 GSE128445.FOXA1.MCF-7 285 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 243 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 325 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 238 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 286 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 344 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 249 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 363 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 253 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 285 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 180 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 369 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 336 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 362 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 343 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 287 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 307 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 281 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 506 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 423 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 159 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 416 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 284 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 166 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 229 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 222 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 226 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 369 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 270 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 222 bp overlap
GRHL2 3 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 356 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 355 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 298 bp overlap
HDAC1 2 datasets
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 400 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 470 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
JUN 3 datasets
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 416 bp overlap
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 333 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 280 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 170 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 120 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYF6 1 dataset
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 124 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 418 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 334 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 216 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 97 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 138 bp overlap
NR3C1 2 datasets
ChIP MDA-MB-361 GSE152203.NR3C1.MDA-MB-361 171 bp overlap
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 201 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 218 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 144 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
PGR 2 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 399 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 242 bp overlap
PKNOX2 1 dataset
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 8 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 481 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 500 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 182 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 495 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 278 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
RAD21 1 dataset
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 179 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 304 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 159 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 268 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 4 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 485 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 391 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 518 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 315 bp overlap
SMARCB1 8 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 493 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 518 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 394 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 429 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 437 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 390 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 201 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 181 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 305 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 171 bp overlap
STAT3 6 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 347 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 432 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 488 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 377 bp overlap
ChIP MCF-7_jc5842 GSE126004.STAT3.MCF-7_jc5842 274 bp overlap
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 189 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TFAP2A 2 datasets
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 281 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 143 bp overlap
TFAP2C 4 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 386 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 303 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 503 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 364 bp overlap
TGIF1 1 dataset
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
THRB 1 dataset
Motif ES_0h ES_0h-THRB_MA1575.2 17 bp overlap
TP73 1 dataset
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF75D 1 dataset
Motif ES_0h ES_0h-ZNF75D_MA1601.2 12 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap