chr12 : 94,731,827 94,732,454
627 bp 96 TFs 3 linked genes
This 627 bp open chromatin element is linked to TMCC3, NDUFA12, and CEP83 and is bound by 96 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
TMCC3 81.6 kb Distal Multiome
NDUFA12 271.6 kb Distal Multiome
CEP83 272.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:94,726,827 – 94,737,454
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 308 bp overlap
ASCL1 2 datasets
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 165 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 143 bp overlap
Ascl2 1 dataset
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BACH2 1 dataset
Motif DE_72h DE_72h-BACH2_MA1470.2 19 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 363 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 332 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 404 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 521 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 419 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 507 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 434 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 170 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
EHF 2 datasets
ChIP RWPE-1 GSE114241.EHF.RWPE-1 276 bp overlap
ChIP primary-bronchial-epithelial GSE85401.EHF.primary-bronchial-epithelial 125 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 163 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 326 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 317 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 321 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 214 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 627 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOS 6 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 360 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 204 bp overlap
ChIP MCF-7 ENCFF282FWZ 177 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 238 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 228 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 162 bp overlap
FOSL1 2 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 115 bp overlap
ChIP HCT116 ENCFF540ZXN 222 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 542 bp overlap
ChIP DE DE-FOXA2-2 437 bp overlap
Foxn1 1 dataset
Motif DE_72h DE_72h-Foxn1_MA1684.1 6 bp overlap
GATA1 4 datasets
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 217 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 147 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 165 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 197 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 574 bp overlap
ChIP DE DE-GATA4-2 620 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 346 bp overlap
ChIP foregut GSE117136.GATA4.foregut 561 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 612 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 245 bp overlap
GATA6 17 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 183 bp overlap
ChIP DE DE-GATA6-1 622 bp overlap
ChIP DE DE-GATA6-2 627 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 478 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 495 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 387 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 616 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 535 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 491 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 613 bp overlap
ChIP foregut GSE117136.GATA6.foregut 586 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 457 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 533 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 489 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 276 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HES6 1 dataset
Motif DE_72h DE_72h-HES6_MA1493.1 10 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 320 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 133 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 201 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 117 bp overlap
ChIP keratinocyte_CHD4-KD GSE139685.JUN.keratinocyte_CHD4-KD 127 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 283 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 124 bp overlap
JUND 1 dataset
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 133 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 389 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 494 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 395 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_72h DE_72h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_72h DE_72h-MEIS3_MA0775.2 7 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 65 bp overlap
MSC 1 dataset
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MYF5 1 dataset
Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_72h DE_72h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
MZF1 1 dataset
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
NEUROD1 6 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 303 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 244 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 339 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 365 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 268 bp overlap
Motif DE_72h DE_72h-NEUROD1_MA1109.2 8 bp overlap
NFATC1 1 dataset
ChIP GM12878 ENCFF023CAZ 349 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 314 bp overlap
Neurod2 2 datasets
Motif DE_72h DE_72h-Neurod2_MA0668.3 8 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nr2e3 1 dataset
Motif DE_72h DE_72h-Nr2e3_MA0164.2 6 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 519 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
PKNOX2 1 dataset
Motif DE_72h DE_72h-PKNOX2_MA0783.1 12 bp overlap
PLAG1 1 dataset
Motif DE_72h DE_72h-PLAG1_MA0163.1 14 bp overlap
Ptf1A 2 datasets
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
REL 1 dataset
Motif DE_72h DE_72h-REL_MA0101.1 10 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 183 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 469 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 543 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 288 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 456 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 483 bp overlap
SMAD3 2 datasets
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 186 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 173 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 370 bp overlap
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 107 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 103 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 226 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 140 bp overlap
SNAI1 1 dataset
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
STAT3 6 datasets
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 204 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 184 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 146 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 153 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 185 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 123 bp overlap
TCF12 1 dataset
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TCF7L1 1 dataset
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TFAP4 1 dataset
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
TGIF1 1 dataset
Motif DE_72h DE_72h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_72h DE_72h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_72h DE_72h-TGIF2LX_MA1571.1 12 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_72h DE_72h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZFP36 1 dataset
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 122 bp overlap
ZNF282 1 dataset
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF354A 1 dataset
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF784 1 dataset
Motif DE_72h DE_72h-ZNF784_MA1717.2 8 bp overlap
ZSCAN4 1 dataset
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap