chr12 : 69,932,219 69,932,717
498 bp 88 TFs 1 linked gene
This 498 bp open chromatin element is linked to MYRFL and is bound by 88 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MYRFL at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:69,927,219 – 69,937,717
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 194 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 454 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 363 bp overlap
BCL6 2 datasets
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 240 bp overlap
BRD4 2 datasets
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 214 bp overlap
ChIP OCI-Ly1_DMSO GSE53601.BRD4.OCI-Ly1_DMSO 136 bp overlap
CTCF 1 dataset
ChIP BL41 GSE31485.CTCF.BL41 93 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 264 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 191 bp overlap
ESR1 3 datasets
ChIP T-47D GSE148277.ESR1.T-47D 196 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 144 bp overlap
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 152 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 317 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 185 bp overlap
FOXA1 42 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 182 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 101 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 251 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 103 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 154 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 156 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 157 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 199 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 174 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 103 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 126 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 52 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 154 bp overlap
ChIP 22Rv1_ab GSE129951.FOXA1.22Rv1_ab 103 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 185 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 95 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 229 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 103 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 71 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 144 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 133 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 95 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 110 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 158 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 180 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 84 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 87 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 69 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 76 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 113 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 118 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 134 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 115 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 150 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 168 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 187 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 93 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 144 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 132 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 97 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 92 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 85 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 284 bp overlap
ChIP DE DE-FOXA2-2 237 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 103 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 261 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA2 2 datasets
ChIP TF1 GSE73207.GATA2.TF1 118 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 107 bp overlap
GATA4 1 dataset
ChIP foregut GSE117136.GATA4.foregut 162 bp overlap
GATA6 8 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 497 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 335 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 457 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 332 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 422 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 498 bp overlap
ChIP foregut GSE117136.GATA6.foregut 193 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 474 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
HOXB13 1 dataset
ChIP 22Rv1 GSE129951.HOXB13.22Rv1 251 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 220 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 462 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 253 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 268 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 498 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 498 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 264 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 498 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 346 bp overlap
ChIP hESC GSE20650.NANOG.hESC 284 bp overlap
ChIP hESC GSE18292.NANOG.hESC 148 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 216 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 273 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 284 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 232 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU5F1 11 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 266 bp overlap
ChIP GM23338 ENCFF333SNB 272 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 463 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 137 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 235 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 204 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 183 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 287 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 254 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 211 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 286 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
ChIP GM23338 ENCSR871KYB.REST.GM23338 135 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 349 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 265 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 457 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 498 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 494 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 284 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 340 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 146 bp overlap
SMARCA4 3 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 187 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 291 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 498 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 498 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 436 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 287 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 184 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 446 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 498 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 214 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 466 bp overlap
ChIP WTC11 ENCFF688PEU 388 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 8 datasets
ChIP T-47D_JC4737 GSE126004.STAT3.T-47D_JC4737 141 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 146 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 190 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 171 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 171 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 240 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 217 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 212 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 144 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 181 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD4 4 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 308 bp overlap
ChIP H1 ENCFF778PAX 236 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 222 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 135 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 262 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 240 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 124 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF257 3 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 182 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 261 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 144 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCFF381BKT 95 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap