chr12 : 62,930,652 62,931,430
778 bp 82 TFs 2 linked genes
This 778 bp open chromatin element is linked to PPM1H and Y_RNA and is bound by 82 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PPM1H 3.7 kb Proximal Proximity
Y_RNA 4.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:62,925,652 – 62,936,430
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 231 bp overlap
ARID1A 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 688 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 351 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 272 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 331 bp overlap
BCL11A 1 dataset
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 61 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 139 bp overlap
BRD4 3 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 185 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 115 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 226 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 236 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 237 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 184 bp overlap
EBF1 2 datasets
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 239 bp overlap
EBF3 1 dataset
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 141 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 124 bp overlap
ESR1 17 datasets
ChIP MCF-7 GSE41561.ESR1.MCF-7 231 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 173 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 389 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 306 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 230 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 173 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 182 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 162 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 389 bp overlap
ChIP MCF-7_Sat-H3B-6545 GSE115607.ESR1.MCF-7_Sat-H3B-6545 276 bp overlap
ChIP MCF-7_TNF GSE59530.ESR1.MCF-7_TNF 207 bp overlap
ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 205 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 204 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 221 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 173 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 232 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 144 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 90 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 215 bp overlap
EZH2 3 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 85 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 146 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 533 bp overlap
Ebf2 1 dataset
Motif DE_72h DE_72h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 250 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 336 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 238 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 82 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 157 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 320 bp overlap
FOXA1 10 datasets
ChIP MCF-7 ERP001226.FOXA1.MCF-7 186 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 129 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 311 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 222 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 296 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 280 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 378 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 174 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 229 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 360 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 768 bp overlap
ChIP DE DE-FOXA2-2 773 bp overlap
GATA1 1 dataset
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
GATA2 12 datasets
ChIP ESF GSE108408.GATA2.ESF 162 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 257 bp overlap
ChIP HepG2 ENCFF905PYM 369 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 112 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 232 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 232 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 265 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 61 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 335 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 195 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 313 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 294 bp overlap
GATA3 12 datasets
ChIP Jurkat GSE29180.GATA3.Jurkat 210 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 278 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 284 bp overlap
ChIP MCF-7 ENCFF352QVM 423 bp overlap
ChIP MCF-7 ENCFF437NQS 367 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 316 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 294 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 216 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 148 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 281 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 274 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 260 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 425 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 250 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 94 bp overlap
ChIP DE DE-GATA4-1 684 bp overlap
ChIP DE DE-GATA4-2 778 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 778 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 778 bp overlap
ChIP DE DE-GATA6-2 778 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 459 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 475 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 467 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 505 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 602 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 447 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 554 bp overlap
GFI1B 2 datasets
ChIP CD34 GSE52924.GFI1B.CD34 214 bp overlap
ChIP K-562 ENCSR509GDT.GFI1B.K-562 187 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 177 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 282 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 244 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 138 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 273 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 197 bp overlap
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 329 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 752 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 145 bp overlap
KDM1A 4 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 211 bp overlap
ChIP K562 ENCFF133OLU 394 bp overlap
ChIP K562 ENCFF934ZRG 456 bp overlap
ChIP K562 ENCFF934ZRG 501 bp overlap
KMT2A 5 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 370 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 478 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 468 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 147 bp overlap
ChIP L826 GSE83671.KMT2A.L826 134 bp overlap
MYB 3 datasets
ChIP DU528 GSE94000.MYB.DU528 308 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 106 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 212 bp overlap
NANOG 1 dataset
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 274 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 444 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 205 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 91 bp overlap
NKX2-1 1 dataset
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 678 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 365 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 240 bp overlap
NR3C1 1 dataset
ChIP HeLa-B2_GRKD_TA_TNFA GSE24518.NR3C1.HeLa-B2_GRKD_TA_TNFA 98 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 363 bp overlap
PHOX2B 1 dataset
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 398 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 329 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 468 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 473 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 437 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 217 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 356 bp overlap
RELA 18 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 540 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 738 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 556 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 592 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 286 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 218 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 209 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 165 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 326 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.RELA.LNCaP_DHT_TNFA 269 bp overlap
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 276 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 383 bp overlap
ChIP LNCaP_TNFA GSE83860.RELA.LNCaP_TNFA 158 bp overlap
ChIP MCF-7_E2_TNF GSE59530.RELA.MCF-7_E2_TNF 162 bp overlap
ChIP MCF-7_TNF GSE59530.RELA.MCF-7_TNF 233 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 220 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 421 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 242 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 188 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 239 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 610 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 307 bp overlap
SMARCA4 12 datasets
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 111 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 63 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 121 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 196 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 110 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 204 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 90 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 50 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 287 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 303 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 227 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 778 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 203 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 253 bp overlap
SPI1 7 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 162 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 137 bp overlap
ChIP HL-60 ENCFF645GBT 135 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 112 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 76 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 105 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 101 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 172 bp overlap
TEAD1 1 dataset
ChIP MSTO GSE68170.TEAD1.MSTO 387 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 131 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 273 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 183 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 201 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF582MWI 671 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 404 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 185 bp overlap
YY1 3 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 217 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 90 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 99 bp overlap
ZBTB1 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 324 bp overlap
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 301 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 263 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 273 bp overlap
ChIP K562 ENCFF795CMH 292 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 264 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 657 bp overlap
ZNF26 1 dataset
ChIP HEK293T GSE78099.ZNF26.HEK293T 363 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 298 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 64 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 147 bp overlap
ZNF528 2 datasets
ChIP HEK293 GSE76494.ZNF528.HEK293 242 bp overlap
ChIP HEK293T GSE78099.ZNF528.HEK293T 242 bp overlap