chr12 : 57,605,566 – 57,605,777
211 bp 63 TFs 3 linked genes
This 211 bp open chromatin element is linked to DTX3, ARHGEF25, and ENSG00000287908 and is bound by 63 transcription factors.
Linked Genes
3 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DTX3 945 bp At TSS Proximity
ARHGEF25 5.7 kb Proximal Proximity
ENSG00000287908 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:57,600,566 – 57,610,777
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast_tumor_Male_7 GSE104399.AR.breast_tumor_Male_7 140 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 211 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 130 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 198 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 119 bp overlap
BRD4 2 datasets
ChIP RH4 GSE83726.BRD4.RH4 59 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 211 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 211 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 211 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 101 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 137 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 188 bp overlap
EZH2 7 datasets
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 81 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 211 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 211 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 116 bp overlap
ChIP keratinocyte ENCFF070STK 211 bp overlap
ChIP keratinocyte ENCFF070STK 211 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 211 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 211 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 210 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 211 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 123 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 164 bp overlap
KLF9 3 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 162 bp overlap
ChIP HEK293 ENCFF588INF 211 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 211 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 211 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 165 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 211 bp overlap
ChIP RH4 GSE83726.MED1.RH4 211 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 211 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 145 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 103 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 211 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 211 bp overlap
MYOD1 7 datasets
ChIP RD GSE137168.MYOD1.RD 158 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 179 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 211 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 211 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 180 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 211 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 211 bp overlap
MYOG 2 datasets
ChIP RH4 GSE83726.MYOG.RH4 211 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 211 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 211 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 211 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 211 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 211 bp overlap
NONO 1 dataset
ChIP HepG2 ENCFF361UQH 86 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 211 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 211 bp overlap
POLR2A 2 datasets
ChIP SK-N-SH ENCFF683PFH 72 bp overlap
ChIP heart left ventricle ENCFF591JWH 97 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 196 bp overlap
RARA 1 dataset
ChIP U-937_ATRA-treated_RAR GSE98006.RARA.U-937_ATRA-treated_RAR 179 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 211 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 211 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 197 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 152 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 211 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 211 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 211 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 211 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 172 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 207 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 211 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 211 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 150 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 120 bp overlap
TBX2 1 dataset
ChIP HepG2 ENCFF811TLA 211 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 54 bp overlap
TFAP4 3 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 193 bp overlap
ChIP HepG2 ENCFF030SRU 211 bp overlap
ChIP HepG2 ENCFF932XOY 211 bp overlap
YY1 3 datasets
ChIP ALL GSE145549.YY1.ALL 81 bp overlap
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 129 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 211 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 170 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 180 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 211 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 211 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 211 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCFF191NFH 211 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 194 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 134 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 130 bp overlap
ZNF274 1 dataset
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 181 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 211 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 211 bp overlap
ZNF341 1 dataset
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 211 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 211 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 174 bp overlap
ZNF501 1 dataset
ChIP HepG2 ENCFF879XZR 74 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 211 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 124 bp overlap
ZNF598 1 dataset
ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 211 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 211 bp overlap
ZNF883 1 dataset
ChIP Hep-G2 ENCSR882YYL.ZNF883.Hep-G2 129 bp overlap
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