chr11 : 86,678,793 – 86,679,160
367 bp 73 TFs 1 linked gene
This 367 bp open chromatin element is linked to ME3 and is bound by 73 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ME3 6.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:86,673,793 – 86,684,160
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AR 1 dataset
ChIP endometrial-stromal-cell GSE119432.AR.endometrial-stromal-cell 218 bp overlap
ARID1A 3 datasets
ChIP 12Z GSE129781.ARID1A.12Z 158 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 367 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 356 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
BHLHE40 1 dataset
ChIP IMR-90 ENCFF312JYK 165 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 255 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 236 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 197 bp overlap
BRD4 8 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 276 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 321 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 245 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 196 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 257 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 206 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 226 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 61 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 181 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 328 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF451CNG 291 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 245 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 226 bp overlap
ESR1_Y537N 1 dataset
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 148 bp overlap
ESR1_Y537S 1 dataset
ChIP T-47D_dox_E2 GSE94493.ESR1_Y537S.T-47D_dox_E2 172 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 204 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 123 bp overlap
FOS 2 datasets
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 154 bp overlap
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 96 bp overlap
FOSL2 3 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 240 bp overlap
ChIP SK-N-SH ENCFF127ZDW 242 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 224 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 282 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 247 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 226 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 367 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 363 bp overlap
FOXA2 8 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 258 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 170 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 226 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 326 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 227 bp overlap
ChIP DE DE-FOXA2-1 367 bp overlap
ChIP DE DE-FOXA2-2 367 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 314 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 295 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 273 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 282 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 143 bp overlap
GATA2 12 datasets
ChIP ESF GSE108408.GATA2.ESF 303 bp overlap
ChIP SH-SY5Y ENCFF485YIB 278 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 334 bp overlap
ChIP SK-N-SH ENCFF764OZD 275 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 163 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 166 bp overlap
ChIP dermal-fibroblast GSE51025.GATA2.dermal-fibroblast 193 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 184 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 193 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 283 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 275 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 259 bp overlap
GATA3 9 datasets
ChIP BE2C GSE65664.GATA3.BE2C 166 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
ChIP MCF-7 ENCFF437NQS 263 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 214 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 181 bp overlap
ChIP SH-SY5Y ENCFF475HYF 367 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 260 bp overlap
ChIP SK-N-SH ENCFF040SSB 260 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 249 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 275 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 215 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 367 bp overlap
ChIP DE DE-GATA4-2 367 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 320 bp overlap
ChIP DE DE-GATA6-2 367 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 360 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 215 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 255 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 251 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 341 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 281 bp overlap
JUND 2 datasets
ChIP SK-N-SH ENCFF551NEQ 295 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 222 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 66 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 143 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 136 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 112 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 163 bp overlap
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 57 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 335 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 359 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 348 bp overlap
ChIP hESC GSE18292.NANOG.hESC 196 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_alpha-amanitin-30min GSE118494.NCAPH2.IMR-90_alpha-amanitin-30min 264 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 249 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 201 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 234 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 166 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 265 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 276 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 367 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 345 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 319 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 270 bp overlap
RAD21 3 datasets
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 293 bp overlap
ChIP IMR-90 ENCFF752PTH 237 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 302 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 100 bp overlap
RCOR1 2 datasets
ChIP IMR-90 ENCFF644MZN 265 bp overlap
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 185 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 243 bp overlap
REST 2 datasets
ChIP PFSK-1 ENCFF845VHA 277 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 140 bp overlap
SIN3A 1 dataset
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 108 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 213 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 346 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 227 bp overlap
SMAD4 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 151 bp overlap
SMARCA2 3 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 275 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 202 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 317 bp overlap
SMARCA4 8 datasets
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 266 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 57 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 78 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 252 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 217 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 367 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 359 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 228 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 245 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 262 bp overlap
SMC3 2 datasets
ChIP IMR-90 ENCFF627LON 221 bp overlap
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 169 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 128 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 367 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 333 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 309 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 367 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 218 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_6aa GSE139053.SS18-SSX.fibroblast_6aa 172 bp overlap
STAT3 3 datasets
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 171 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 184 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 216 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 347 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 196 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 282 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 367 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 204 bp overlap
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