chr11 : 27,370,252 – 27,370,676
424 bp 75 TFs 1 linked gene
This 424 bp open chromatin element is linked to CCDC34 and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CCDC34 7.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:27,365,252 – 27,375,676
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 174 bp overlap
BRD4 5 datasets
ChIP HeLa GSE51633.BRD4.HeLa 206 bp overlap
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 85 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 145 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 216 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 194 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 134 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 114 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 211 bp overlap
CTCF 8 datasets
ChIP BJ ENCSR000DQI.CTCF.BJ 167 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 187 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 253 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 155 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 281 bp overlap
ChIP brain ENCFF163BBN 424 bp overlap
ChIP endodermal cell ENCFF471YCZ 388 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 173 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 367 bp overlap
ChIP K562 ENCFF622HMZ 417 bp overlap
ELF1 8 datasets
ChIP A-549 GSE122203.ELF1.A-549 168 bp overlap
ChIP K-562 ENCSR502OEK.ELF1.K-562 357 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 267 bp overlap
ChIP K562 ENCFF457KVR 387 bp overlap
ChIP K562 ENCFF496AKI 151 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 345 bp overlap
ChIP SK-N-SH ENCFF871YHY 330 bp overlap
ChIP SK-N-SH ENCSR000BTA.ELF1.SK-N-SH 181 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 178 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 117 bp overlap
ETV1 3 datasets
ChIP GIST GSE22441.ETV1.GIST 182 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 220 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 157 bp overlap
FOXA1 1 dataset
ChIP A-549 ENCSR000BPX.FOXA1.A-549 79 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 147 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 114 bp overlap
FOXK2 1 dataset
ChIP K-562 ENCSR508DQA.FOXK2.K-562 110 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 66 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 197 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 174 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 286 bp overlap
GATA2 3 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 392 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 191 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 211 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 129 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 382 bp overlap
ChIP DE DE-GATA4-2 357 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 297 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 358 bp overlap
ChIP DE DE-GATA6-2 351 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 305 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 393 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 369 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 355 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 407 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 327 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 269 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 208 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 226 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 266 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 224 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 226 bp overlap
HNRNPUL1 2 datasets
ChIP K-562 GSE120104.HNRNPUL1.K-562 195 bp overlap
ChIP K-562 ENCSR296MXW.HNRNPUL1.K-562 168 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 389 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 216 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 107 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 200 bp overlap
MGA::EVX1 1 dataset
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 88 bp overlap
MXI1 1 dataset
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 133 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 202 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 239 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 162 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 206 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 146 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 253 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 193 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 292 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 254 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 202 bp overlap
ChIP K562 ENCFF167YID 238 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 272 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 239 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 258 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 333 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 154 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 154 bp overlap
PRDM1 1 dataset
Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 138 bp overlap
ChIP HepG2 ENCFF561IAJ 137 bp overlap
RFX1 4 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 260 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 179 bp overlap
ChIP K562 ENCFF421AVO 277 bp overlap
ChIP K562 ENCFF809XVG 301 bp overlap
SIN3A 3 datasets
ChIP PFSK-1 ENCFF218MAY 257 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 170 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 124 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 324 bp overlap
SPI1 4 datasets
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 201 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 283 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 164 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
STAT3 1 dataset
Motif DE_36h DE_36h-STAT3_MA0144.3 9 bp overlap
SUZ12 1 dataset
ChIP WA01 ENCSR000ATS.SUZ12.WA01 142 bp overlap
Stat5a 1 dataset
Motif DE_36h DE_36h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_36h DE_36h-Stat5aStat5b_MA0519.2 9 bp overlap
TBX21 1 dataset
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 200 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 269 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 151 bp overlap
TRIM28 1 dataset
ChIP WA01 GSE78099.TRIM28.WA01 179 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 182 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap
ZIM3 1 dataset
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
ZNF143 1 dataset
ChIP HeLa GSE39263.ZNF143.HeLa 130 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 177 bp overlap
ZNF282 1 dataset
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
ZNF317 1 dataset
ChIP HEK293T GSE78099.ZNF317.HEK293T 107 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 86 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 187 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 73 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 173 bp overlap
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