chr9 : 124,012,707 – 124,013,310
603 bp 80 TFs 1 linked gene
This 603 bp open chromatin element is linked to LHX2 and is bound by 80 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LHX2 940 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:124,007,707 – 124,018,310
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AGO1 5 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 212 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 200 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 195 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 183 bp overlap
ChIP HepG2 ENCFF358CXO 481 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 603 bp overlap
ARID4B 1 dataset
ChIP PC-3 GSE116669.ARID4B.PC-3 382 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 356 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 164 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 69 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 55 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 75 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 476 bp overlap
BRD4 13 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 361 bp overlap
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 159 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 262 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 266 bp overlap
ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 332 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 475 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 193 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 267 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 351 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 118 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 238 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 296 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 590 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 229 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 282 bp overlap
CHD1 4 datasets
ChIP H1 ENCFF998XEK 269 bp overlap
ChIP H1 ENCFF998XEK 533 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 557 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 204 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 197 bp overlap
CTCF 3 datasets
ChIP MM1-S GSE43743.CTCF.MM1-S 50 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 386 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 158 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 302 bp overlap
ChIP BLaER1 ENCFF274GAT 184 bp overlap
ChIP BLaER1 ENCFF460KDD 184 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 466 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 290 bp overlap
EHMT2 1 dataset
ChIP Rh41 GSE118666.EHMT2.Rh41 56 bp overlap
ESR1 4 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 563 bp overlap
ChIP NCI-H3396_E2 GSE32349.ESR1.NCI-H3396_E2 314 bp overlap
ChIP NCI-H3396_ETOH GSE32349.ESR1.NCI-H3396_ETOH 353 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 265 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 540 bp overlap
EZH2 27 datasets
ChIP A673 ENCFF790MVL 603 bp overlap
ChIP A673 ENCFF955JRZ 603 bp overlap
ChIP GM23248 ENCFF404ZHM 75 bp overlap
ChIP GM23248 ENCFF404ZHM 515 bp overlap
ChIP GM23338 ENCFF613YON 603 bp overlap
ChIP GM23338 ENCFF886DXX 603 bp overlap
ChIP H1 ENCFF232NZA 603 bp overlap
ChIP SK-N-SH ENCFF657FZK 66 bp overlap
ChIP astrocyte ENCFF365JTP 525 bp overlap
ChIP astrocyte ENCFF365JTP 141 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 284 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 287 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 603 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 329 bp overlap
ChIP fibroblast of lung ENCFF479BAW 487 bp overlap
ChIP hESC GSE113817.EZH2.hESC 551 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 56 bp overlap
ChIP hepatocyte ENCFF552DZB 603 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.EZH2.hiPSC_WTa_RNase-neg 197 bp overlap
ChIP keratinocyte ENCFF070STK 131 bp overlap
ChIP keratinocyte ENCFF070STK 481 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 274 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 603 bp overlap
ChIP neural cell ENCFF610EPB 78 bp overlap
ChIP neural cell ENCFF610EPB 366 bp overlap
ChIP neural progenitor cell ENCFF018MKA 603 bp overlap
ChIP neural progenitor cell ENCFF472NFV 603 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 163 bp overlap
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 233 bp overlap
GABPA 2 datasets
ChIP WA01 ENCSR000BIW.GABPA.WA01 169 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 131 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 165 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 260 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 182 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 282 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 244 bp overlap
ChIP GM12878 ENCFF824TGK 356 bp overlap
ChIP GM12878 ENCFF824TGK 250 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCFF918AID 358 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 359 bp overlap
INO80 3 datasets
ChIP Hep-G2 GSE107730.INO80.Hep-G2 229 bp overlap
ChIP Hep-G2 GSE107730.INO80.Hep-G2 232 bp overlap
ChIP Huh-7 GSE97411.INO80.Huh-7 603 bp overlap
IRF4 2 datasets
ChIP T-cell GSE136853.IRF4.T-cell 171 bp overlap
ChIP U266 GSE142493.IRF4.U266 83 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 331 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 424 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 217 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 473 bp overlap
KMT2A 2 datasets
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 257 bp overlap
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 210 bp overlap
MBD3 3 datasets
ChIP MCF-7 GSE44737.MBD3.MCF-7 217 bp overlap
ChIP MCF-7 GSE44737.MBD3.MCF-7 168 bp overlap
ChIP MCF-7 GSE44737.MBD3.MCF-7 130 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 216 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 475 bp overlap
MTF2 1 dataset
ChIP HepG2 ENCFF916FZN 87 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 79 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 206 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 315 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 251 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 270 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 134 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 131 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 275 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 265 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 188 bp overlap
ChIP HEK293 GSE89017.OGG1.HEK293 321 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 280 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 137 bp overlap
PAX5 1 dataset
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 165 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 51 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 202 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 603 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 202 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 252 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 249 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 420 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 270 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 131 bp overlap
RBFOX2 1 dataset
ChIP K562 ENCFF196WTG 316 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 378 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 603 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 408 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 160 bp overlap
RUVBL2 1 dataset
ChIP Huh-7 GSE97411.RUVBL2.Huh-7 250 bp overlap
SFMBT1 1 dataset
ChIP HeLa GSE45441.SFMBT1.HeLa 95 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 126 bp overlap
SMAD2-3 5 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 158 bp overlap
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 243 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 105 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 344 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 409 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 104 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 59 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 191 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 348 bp overlap
ChIP NCI-H1703 GSE121755.SMARCA4.NCI-H1703 402 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 280 bp overlap
SREBP2 1 dataset
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 239 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 50 bp overlap
SUZ12 11 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 130 bp overlap
ChIP H1 ENCFF507HGF 128 bp overlap
ChIP H1 ENCFF881NFR 603 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 91 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 318 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 69 bp overlap
ChIP NT2/D1 ENCFF574SXS 184 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 302 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 196 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.SUZ12.hiPSC_WTa_RNase-neg 119 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.SUZ12.hiPSC_WTb_RNase-neg 344 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 317 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 317 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 222 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 321 bp overlap
UBTF 1 dataset
ChIP hESC GSE76586.UBTF.hESC 96 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 253 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 603 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 354 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 130 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 603 bp overlap
ZHX1 2 datasets
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 407 bp overlap
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 156 bp overlap
ZNF263 4 datasets
ChIP HEK293 ENCFF336CWQ 345 bp overlap
ChIP HEK293 ENCFF336CWQ 141 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 221 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 509 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 385 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 317 bp overlap
ZNF598 1 dataset
ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 203 bp overlap
ZNF800 1 dataset
ChIP Hep-G2 ENCSR701WPG.ZNF800.Hep-G2 603 bp overlap
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