chr9 : 101,736,824 101,737,014
190 bp 73 TFs 1 linked gene
This 190 bp open chromatin element is linked to GRIN3A and is bound by 73 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GRIN3A 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:101,731,824 – 101,742,014
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AR 3 datasets
ChIP A-375 GSE116189.AR.A-375 190 bp overlap
ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 190 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 135 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 147 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 135 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 103 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 124 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 110 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 190 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 190 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 190 bp overlap
EHMT2 3 datasets
ChIP HepG2 ENCFF004KYI 190 bp overlap
ChIP K-562 ENCSR175EOM.EHMT2.K-562 190 bp overlap
ChIP K562 ENCFF053BWO 190 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 152 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 190 bp overlap
ESR1 2 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 125 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 79 bp overlap
ETV1 1 dataset
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 112 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 190 bp overlap
EZH2 12 datasets
ChIP A673 ENCFF955JRZ 190 bp overlap
ChIP A673 ENCFF955JRZ 80 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 190 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 190 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 190 bp overlap
ChIP T-REx-293_K27WT_12h GSE118954.EZH2.T-REx-293_K27WT_12h 190 bp overlap
ChIP T98G GSE112240.EZH2.T98G 190 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 190 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 190 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 166 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 190 bp overlap
ChIP neural progenitor cell ENCFF472NFV 178 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF939VKA 171 bp overlap
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 121 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 190 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 111 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
INSM1 1 dataset
Motif ES_0h ES_0h-INSM1_MA0155.1 12 bp overlap
JARID2 1 dataset
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 184 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 190 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 125 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 140 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MIER1 2 datasets
ChIP K-562 ENCSR426MDV.MIER1.K-562 190 bp overlap
ChIP K562 ENCFF584AYC 190 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 172 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 190 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 163 bp overlap
NFKB2 1 dataset
Motif ES_0h ES_0h-NFKB2_MA0778.2 11 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 52 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
REST 70 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 190 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 190 bp overlap
ChIP A549 ENCFF148AIS 130 bp overlap
ChIP CD4 GSE49570.REST.CD4 183 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
ChIP GM12878 ENCFF235NGC 181 bp overlap
ChIP GM12878 ENCFF943QPB 135 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 190 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 190 bp overlap
ChIP GM23338 ENCFF024TCL 187 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 190 bp overlap
ChIP GP5D GSE51234.REST.GP5D 190 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 190 bp overlap
ChIP H1 ENCFF203SWY 190 bp overlap
ChIP H1 ENCFF203SWY 190 bp overlap
ChIP H1 ENCFF429RUE 190 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 182 bp overlap
ChIP HCT116 ENCFF929AYY 190 bp overlap
ChIP HEK293 ENCFF073DOT 190 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 190 bp overlap
ChIP HL-60 ENCFF589LOF 190 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 190 bp overlap
ChIP HeLa-S3 ENCFF911DTC 179 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 190 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 190 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 190 bp overlap
ChIP HepG2 ENCFF122AWR 190 bp overlap
ChIP HepG2 ENCFF800JSL 178 bp overlap
ChIP Ishikawa ENCFF456OHV 190 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 190 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 190 bp overlap
ChIP K-562 GSE70482.REST.K-562 190 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 190 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 190 bp overlap
ChIP K562 ENCFF430APM 188 bp overlap
ChIP K562 ENCFF688UKW 190 bp overlap
ChIP K562 ENCFF758CZL 190 bp overlap
ChIP K562 ENCFF758CZL 190 bp overlap
ChIP MCF-7 ENCFF893RRD 190 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 190 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 190 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 190 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 190 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 190 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 190 bp overlap
ChIP PFSK-1 ENCFF668WMP 173 bp overlap
ChIP PFSK-1 ENCFF845VHA 190 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 190 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 190 bp overlap
ChIP Panc1 ENCFF338WSQ 190 bp overlap
ChIP Panc1 ENCFF518EEQ 137 bp overlap
ChIP Panc1 ENCFF629OJO 190 bp overlap
ChIP SK-N-SH ENCFF635KBN 190 bp overlap
ChIP SK-N-SH ENCFF861MKH 190 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 180 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 190 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 190 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 190 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 190 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 190 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 190 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 190 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 190 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 190 bp overlap
ChIP liver ENCFF240FWT 190 bp overlap
ChIP liver ENCFF577AZT 190 bp overlap
ChIP liver ENCSR893QWP.REST.liver 190 bp overlap
ChIP liver ENCSR867WPH.REST.liver 190 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 190 bp overlap
ChIP neural ENCSR000BTV.REST.neural 151 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 112 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 190 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 190 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 163 bp overlap
ChIP H1 ENCFF896IJG 110 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 190 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 187 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 173 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 128 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 190 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 190 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 190 bp overlap
SP1 1 dataset
ChIP H1 ENCFF263FUH 190 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 128 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SUZ12 2 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 190 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 190 bp overlap
Stat6 1 dataset
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TBX1 1 dataset
Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif ES_0h ES_0h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif ES_0h ES_0h-TBX2_MA0688.2 9 bp overlap
TBX4 1 dataset
Motif ES_0h ES_0h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TEAD4 3 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 190 bp overlap
ChIP A549 ENCFF243FTL 190 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 118 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 116 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 190 bp overlap
USF1 1 dataset
ChIP WTC11 ENCFF699QGS 190 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 190 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 190 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 190 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF701 1 dataset
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF740 1 dataset
Motif ES_0h ES_0h-ZNF740_MA0753.3 10 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap