chr9 : 15,423,473 15,423,601
128 bp 80 TFs 1 linked gene
This 128 bp open chromatin element is linked to SNAPC3 and is bound by 80 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SNAPC3 605 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:15,418,473 – 15,428,601
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 128 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 128 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 128 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 128 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 87 bp overlap
ChIP RKO GSE47190.BRD1.RKO 128 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 107 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 118 bp overlap
BRD4 10 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 128 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 101 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 105 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 128 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 62 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 76 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 128 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 72 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 51 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 56 bp overlap
CBX5 1 dataset
ChIP GM12878 ENCFF542UDC 56 bp overlap
CHD1 5 datasets
ChIP K562 ENCFF118VJV 115 bp overlap
ChIP MCF-7 ENCSR360JOC.CHD1.MCF-7 52 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 128 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 128 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 59 bp overlap
CTCF 67 datasets
ChIP 22Rv1 ENCFF466OXN 128 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 128 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 77 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 128 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 128 bp overlap
ChIP DOHH2 ENCFF637WNW 65 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 51 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 128 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 128 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 107 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 128 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 90 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 65 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 51 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 128 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 124 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 128 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 128 bp overlap
ChIP PC-3 ENCFF487TUI 65 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 128 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 128 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 128 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 115 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 128 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 128 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 100 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 64 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 100 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 128 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 128 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 61 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 58 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 128 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 128 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 128 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 128 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 126 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 82 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 59 bp overlap
ChIP brain ENCFF685VRG 107 bp overlap
ChIP chondrocyte ENCFF134ORZ 128 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 54 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 128 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 89 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 128 bp overlap
ChIP endodermal cell ENCFF471YCZ 59 bp overlap
ChIP esophagus muscularis mucosa ENCFF421MEH 126 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 128 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 128 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 89 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 106 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 82 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 74 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 128 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 128 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 128 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 94 bp overlap
ChIP nephron ENCFF411ACD 56 bp overlap
ChIP nephron ENCFF589HXU 96 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 128 bp overlap
ChIP neural cell ENCFF335ADI 128 bp overlap
ChIP neural progenitor cell ENCFF581WPG 128 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 80 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 128 bp overlap
ChIP suprapubic skin ENCFF266CTJ 52 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 94 bp overlap
ChIP transverse colon ENCFF749DPF 89 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 86 bp overlap
DUX4 1 dataset
ChIP HEK293 GSE75791.DUX4.HEK293 128 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 104 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 128 bp overlap
ELF1 2 datasets
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 70 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 128 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 128 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 125 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 128 bp overlap
ESR1 1 dataset
ChIP MCF-7_H3B-5942 GSE115607.ESR1.MCF-7_H3B-5942 82 bp overlap
ETS1 2 datasets
ChIP DU145 GSE59021.ETS1.DU145 122 bp overlap
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 111 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCFF264DJE 108 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 115 bp overlap
GRHL1 1 dataset
ChIP MCF-7 GSE140185.GRHL1.MCF-7 128 bp overlap
GRHL2 7 datasets
ChIP HBE GSE46194.GRHL2.HBE 127 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 128 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 124 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 128 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 128 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 93 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 128 bp overlap
HDAC1 6 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 128 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.HDAC1.MCF-7_ARID1A-KO 128 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 115 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_clone14 118 bp overlap
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 128 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 128 bp overlap
HOXB13 1 dataset
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 128 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 128 bp overlap
KAT7 1 dataset
ChIP WTC11 ENCFF581TPB 65 bp overlap
KDM5A 1 dataset
ChIP HepG2 ENCFF105YGO 75 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 72 bp overlap
KMT2A 9 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 102 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 128 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 128 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 128 bp overlap
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 128 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 128 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 128 bp overlap
ChIP SHI-1 GSE95511.KMT2A.SHI-1 75 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 99 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 128 bp overlap
MEN1 2 datasets
ChIP OCI-AML-3_DMSO GSE129636.MEN1.OCI-AML-3_DMSO 60 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 81 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 128 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 128 bp overlap
MYC 1 dataset
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 128 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 98 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 50 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 128 bp overlap
PGR 2 datasets
ChIP AB32 GSE31129.PGR.AB32 85 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 52 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 128 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 128 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 128 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCFF589FCY 128 bp overlap
RAD21 5 datasets
ChIP GP5D GSE51234.RAD21.GP5D 128 bp overlap
ChIP MCF-7 ENCFF694KOM 79 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 128 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 69 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 128 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 128 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 128 bp overlap
RUNX1 1 dataset
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 71 bp overlap
RUNX2 1 dataset
ChIP PER-117 GSE151819.RUNX2.PER-117 50 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 128 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 128 bp overlap
SIN3A 8 datasets
ChIP A-549 ENCSR513XQX.SIN3A.A-549 128 bp overlap
ChIP A-549 ENCSR000BRM.SIN3A.A-549 68 bp overlap
ChIP H1 ENCFF042ZSL 128 bp overlap
ChIP H1 ENCFF896IJG 128 bp overlap
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 128 bp overlap
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 128 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 128 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 128 bp overlap
SIX5 1 dataset
ChIP A-549 ENCSR000BRL.SIX5.A-549 71 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 53 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 95 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 128 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 128 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 124 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 128 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 78 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 128 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 128 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 104 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 58 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 128 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 128 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 115 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 120 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 128 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 64 bp overlap
TP53 2 datasets
ChIP IMR-90_SENE GSE53491.TP53.IMR-90_SENE 84 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 57 bp overlap
XBP1 2 datasets
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 128 bp overlap
ChIP LNCaP_px330 GSE121880.XBP1.LNCaP_px330 128 bp overlap
YY1 10 datasets
ChIP ALL GSE145549.YY1.ALL 128 bp overlap
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 107 bp overlap
ChIP GM12892 ENCFF802MHJ 128 bp overlap
ChIP GM12892 ENCSR000BLT.YY1.GM12892 118 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 123 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 128 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 108 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 122 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 128 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 128 bp overlap
YY2 1 dataset
ChIP HeLa GSE76856.YY2.HeLa 114 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 90 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 128 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 106 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 128 bp overlap
ZNF18 1 dataset
ChIP HepG2 ENCFF479ZIQ 110 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 106 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 128 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 110 bp overlap
ZNF711 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZNF711.HEK293T_22Rv1 59 bp overlap
ZNF790 1 dataset
ChIP HepG2 ENCFF743NFR 128 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 57 bp overlap