chr9 : 2,613,640 2,614,231
591 bp 78 TFs 2 linked genes
This 591 bp open chromatin element is linked to VLDLR-AS1 and VLDLR and is bound by 78 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
VLDLR-AS1 7.2 kb Proximal Proximity
VLDLR 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:2,608,640 – 2,619,231
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 25 datasets
ChIP LNCaP GSE110655.AR.LNCaP 393 bp overlap
ChIP LNCaP GSE94682.AR.LNCaP 238 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 381 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 185 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 201 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 250 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 194 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 290 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 189 bp overlap
ChIP LNCaP_DHT_Bag-1L-CMut GSE89938.AR.LNCaP_DHT_Bag-1L-CMut 150 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 323 bp overlap
ChIP LNCaP_F266S_shFOXA1_Ethanol GSE128883.AR.LNCaP_F266S_shFOXA1_Ethanol 72 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 466 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 113 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 213 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 378 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 273 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 352 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 450 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 420 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 144 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 368 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 159 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 140 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 216 bp overlap
ARID1A 1 dataset
ChIP LNCaP_r1881 GSE94682.ARID1A.LNCaP_r1881 189 bp overlap
ASCL1 2 datasets
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 276 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 177 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 479 bp overlap
BRD4 6 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 233 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 339 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 188 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 543 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 205 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 99 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 167 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 396 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 245 bp overlap
CREB1 2 datasets
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 347 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 203 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 338 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 394 bp overlap
CTCF 4 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 230 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 262 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 232 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 105 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 261 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 173 bp overlap
ESR1 7 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 226 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 359 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 394 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 445 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 321 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 457 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 298 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 441 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 211 bp overlap
FIGLA 1 dataset
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
FOXA1 9 datasets
ChIP LNCaP-C4-2B GSE40050.FOXA1.LNCaP-C4-2B 294 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 283 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 406 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 202 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 159 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 333 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 158 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 324 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 292 bp overlap
ChIP DE DE-FOXA2-2 382 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 176 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 277 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 277 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 229 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 284 bp overlap
ChIP DE DE-GATA4-2 338 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 296 bp overlap
ChIP DE DE-GATA6-2 309 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 235 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 462 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 169 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 283 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 176 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 279 bp overlap
HIF1A 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-Y 276 bp overlap
HOXB13 2 datasets
ChIP LNCaP GSE96652.HOXB13.LNCaP 242 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 302 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 127 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 468 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 375 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 381 bp overlap
JUND 3 datasets
ChIP H1 ENCFF468JZD 180 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 237 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 152 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 449 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 372 bp overlap
MYC 2 datasets
ChIP LNCaP_MYC GSE73994.MYC.LNCaP_MYC 96 bp overlap
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 365 bp overlap
MYCN 2 datasets
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 351 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 511 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 430 bp overlap
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 369 bp overlap
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 393 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 198 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 217 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 293 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 148 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 121 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 287 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 386 bp overlap
PGR 1 dataset
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 272 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 191 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 474 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 522 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 266 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 141 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 195 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 260 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 400 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 166 bp overlap
ChIP H1 ENCFF042ZSL 520 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 150 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 241 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 223 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 235 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 185 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 352 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 320 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 126 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 412 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 321 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 216 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 256 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 243 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 206 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 415 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 257 bp overlap
TBP 1 dataset
ChIP hESC_8h GSE122298.TBP.hESC_8h 112 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 197 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 277 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 283 bp overlap
TFAP4 1 dataset
ChIP LNCaP GSE28857.TFAP4.LNCaP 310 bp overlap
THAP1 1 dataset
Motif DE_36h DE_36h-THAP1_MA0597.3 8 bp overlap
THRA 1 dataset
Motif DE_36h DE_36h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 401 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 263 bp overlap
USF1 1 dataset
Motif DE_36h DE_36h-USF1_MA0093.4 10 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 507 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 245 bp overlap
ZEB1 2 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 84 bp overlap
ZFP42 1 dataset
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 485 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 385 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 266 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 254 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 304 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 177 bp overlap
ZNF549 1 dataset
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap