chr9 : 942,984 943,487
503 bp 99 TFs 0 linked genes
This 503 bp open chromatin element has no linked target genes and is bound by 99 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:937,984 – 948,487
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_DMSO_1d GSE90550.AHR.MCF-7_DMSO_1d 139 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 144 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 404 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 280 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 110 bp overlap
Atf3 1 dataset
Motif DE_24h DE_24h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_24h DE_24h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_24h DE_24h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_24h DE_24h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_24h DE_24h-BATF3_MA0835.3 7 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 276 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 303 bp overlap
BNC2 1 dataset
Motif DE_24h DE_24h-BNC2_MA1928.2 7 bp overlap
BRD4 11 datasets
ChIP MM1-S GSE45984.BRD4.MM1-S 503 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 503 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 503 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 503 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 471 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 503 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 503 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 503 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 292 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 457 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 381 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 203 bp overlap
CDK9 3 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 241 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 284 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 172 bp overlap
CREB1 2 datasets
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 264 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 218 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 220 bp overlap
EHF 1 dataset
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_24h DE_24h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif DE_24h DE_24h-ELK4_MA0076.3 9 bp overlap
ETV1 1 dataset
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
ETV6 1 dataset
Motif DE_24h DE_24h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_24h DE_24h-ETV7_MA1708.2 9 bp overlap
EZH2 1 dataset
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 157 bp overlap
Elf5 1 dataset
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap
FOS 3 datasets
Motif DE_24h DE_24h-FOS_MA0476.2 8 bp overlap
ChIP MCF-7 ENCFF282FWZ 275 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 295 bp overlap
FOSL1 1 dataset
Motif DE_24h DE_24h-FOSL1_MA0477.3 9 bp overlap
FOSL2 2 datasets
Motif DE_24h DE_24h-FOSL2_MA0478.2 10 bp overlap
ChIP MCF-7 ENCSR000BUI.FOSL2.MCF-7 175 bp overlap
FOXA1 7 datasets
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 144 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 151 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 134 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 167 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 156 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 312 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 404 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 503 bp overlap
ChIP DE DE-FOXA2-2 503 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 280 bp overlap
GABPA 3 datasets
Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap
ChIP MCF-7 ENCSR000BUK.GABPA.MCF-7 141 bp overlap
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 126 bp overlap
GATA3 1 dataset
ChIP MCF-7 ENCFF437NQS 351 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 453 bp overlap
ChIP DE DE-GATA4-2 503 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 296 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 503 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 461 bp overlap
ChIP DE DE-GATA6-2 498 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 441 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 266 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 395 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 410 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 320 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 503 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 256 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 230 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 124 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 124 bp overlap
Ikzf3 1 dataset
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
JDP2 1 dataset
Motif DE_24h DE_24h-JDP2_MA0655.1 9 bp overlap
JUN 12 datasets
ChIP 786-O GSE86092.JUN.786-O 150 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 377 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 313 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 369 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 329 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 470 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 501 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 306 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 501 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 394 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 283 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 338 bp overlap
JUNB 1 dataset
Motif DE_24h DE_24h-JUNB_MA0490.3 9 bp overlap
JUND 3 datasets
Motif DE_24h DE_24h-JUND_MA0491.3 9 bp overlap
ChIP H1 ENCFF010YXS 249 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 167 bp overlap
Jun 1 dataset
Motif DE_24h DE_24h-Jun_MA0489.3 8 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 264 bp overlap
MAX 2 datasets
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 277 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 256 bp overlap
MED1 6 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 245 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 269 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 91 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 317 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 480 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 428 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap
MYB 1 dataset
ChIP PF-382 GSE94000.MYB.PF-382 244 bp overlap
MYC 1 dataset
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 235 bp overlap
NFE2 1 dataset
Motif DE_24h DE_24h-NFE2_MA0841.2 10 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 402 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 270 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 256 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 192 bp overlap
RFX1 2 datasets
ChIP MCF-7 ENCFF782EZS 301 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 227 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 208 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 387 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 372 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 295 bp overlap
ChIP HEK293 ENCFF711QQB 345 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 395 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 174 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 484 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 362 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 150 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 178 bp overlap
SMARCA4 2 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 272 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 319 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 272 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 276 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 225 bp overlap
SOX2 1 dataset
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 117 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SPIB 2 datasets
Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 264 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 499 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 278 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 353 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 177 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 340 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 203 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 169 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 300 bp overlap
ZBTB11 1 dataset
Motif DE_24h DE_24h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 1 dataset
Motif DE_24h DE_24h-ZBTB7A_MA0750.3 9 bp overlap
ZKSCAN5 3 datasets
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF175 1 dataset
Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 259 bp overlap