chr1 : 160,910,331 – 160,911,177
846 bp 97 TFs 14 linked genes
This 846 bp open chromatin element is linked to 14 target genes and is bound by 97 transcription factors.
Linked Genes
14 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ITLN2 44.1 kb Distal Multiome
F11R 110.5 kb Distal Multiome
TSTD1 128.3 kb Distal Multiome
USF1 135.3 kb Distal Multiome
KLHDC9 187.7 kb Distal Multiome
CD48 198.8 kb Distal Multiome
PFDN2 207.4 kb Distal Multiome
NIT1 207.4 kb Distal Multiome
DEDD 221.9 kb Distal Multiome
ENSG00000228863 237.2 kb Distal Multiome
UFC1 243.3 kb Distal Multiome
PPOX 255.7 kb Distal Multiome
B4GALT3 266.8 kb Distal Multiome
NDUFS2 291.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:160,905,331 – 160,916,177
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ATOH7 1 dataset
Motif DE_72h DE_72h-ATOH7_MA1468.1 10 bp overlap
Ascl2 1 dataset
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BHLHA15 1 dataset
Motif DE_72h DE_72h-BHLHA15_MA0607.2 10 bp overlap
BHLHE22 2 datasets
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
Bcl11B 1 dataset
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
Bhlha15 1 dataset
Motif DE_72h DE_72h-Bhlha15_MA1472.3 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 62 bp overlap
EOMES 1 dataset
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_72h DE_72h-ETV2FIGLA_MA1941.2 13 bp overlap
EZH2 2 datasets
ChIP T98G GSE112240.EZH2.T98G 279 bp overlap
ChIP T98G GSE112240.EZH2.T98G 184 bp overlap
FERD3L 1 dataset
Motif DE_72h DE_72h-FERD3L_MA1485.1 14 bp overlap
FOXA1 1 dataset
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 827 bp overlap
ChIP DE DE-FOXA2-2 726 bp overlap
Motif DE_72h DE_72h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_72h DE_72h-FOXD1_MA0031.2 7 bp overlap
FOXG1 1 dataset
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_72h DE_72h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_72h DE_72h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_72h DE_72h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_72h DE_72h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_72h DE_72h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_72h DE_72h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_72h DE_72h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_72h DE_72h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_72h DE_72h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_72h DE_72h-Foxo3_MA0157.4 7 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 846 bp overlap
ChIP DE DE-GATA4-2 822 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 791 bp overlap
ChIP DE DE-GATA6-2 846 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 595 bp overlap
ChIP foregut GSE117136.GATA6.foregut 261 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
MAX::MYC 1 dataset
Motif DE_72h DE_72h-MAXMYC_MA0059.2 10 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 248 bp overlap
MSC 1 dataset
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MXI1 1 dataset
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
MYB 2 datasets
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 205 bp overlap
MYF5 1 dataset
Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_72h DE_72h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NFATC3 1 dataset
ChIP K562 ENCFF078EKB 323 bp overlap
NFYA 2 datasets
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
ChIP K562 ENCFF666BET 251 bp overlap
NFYB 8 datasets
ChIP GM12878 ENCFF474DNH 239 bp overlap
ChIP GM12878 ENCFF474DNH 381 bp overlap
ChIP GM12878 ENCSR000DNM.NFYB.GM12878 217 bp overlap
ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 115 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 274 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 227 bp overlap
ChIP K562 ENCFF709RXX 132 bp overlap
ChIP WTC11 ENCFF751ZTQ 320 bp overlap
NFYC 1 dataset
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NKX2-1 1 dataset
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 279 bp overlap
Neurod2 2 datasets
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
OSR2 1 dataset
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
Olig2 2 datasets
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PBX1 1 dataset
Motif DE_72h DE_72h-PBX1_MA0070.2 9 bp overlap
Prdm5 1 dataset
Motif DE_72h DE_72h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 3 datasets
Motif DE_72h DE_72h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
RBM25 2 datasets
ChIP K562 ENCFF248CGR 302 bp overlap
ChIP K562 ENCFF957ORK 301 bp overlap
RUNX2 1 dataset
Motif DE_72h DE_72h-RUNX2_MA0511.2 9 bp overlap
Rfx6 1 dataset
Motif DE_72h DE_72h-Rfx6_MA1724.2 9 bp overlap
Runx1 1 dataset
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 155 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 697 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 463 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 308 bp overlap
SMAD3 1 dataset
Motif DE_72h DE_72h-SMAD3_MA0795.1 10 bp overlap
SMAD5 1 dataset
Motif DE_72h DE_72h-SMAD5_MA1557.1 10 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 472 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 638 bp overlap
Smad4 1 dataset
Motif DE_72h DE_72h-Smad4_MA1153.2 7 bp overlap
Spz1 1 dataset
Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap
TAL1::TCF3 2 datasets
Motif DE_72h DE_72h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_72h DE_72h-TAL1TCF3_MA0091.2 10 bp overlap
TBR1 1 dataset
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TCF21 1 dataset
Motif DE_72h DE_72h-TCF21_MA1568.2 10 bp overlap
TFAP4 2 datasets
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
Motif DE_72h DE_72h-TFAP4_MA1570.1 10 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_72h DE_72h-TFAP4FLI1_MA1967.2 14 bp overlap
Tbx6 1 dataset
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
Tcf12 2 datasets
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_72h DE_72h-Tcf21_MA0832.2 10 bp overlap
Thap11 1 dataset
Motif DE_72h DE_72h-Thap11_MA1573.2 14 bp overlap
Twist2 2 datasets
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZBTB18 1 dataset
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZNF16 2 datasets
Motif DE_72h DE_72h-ZNF16_MA1654.2 21 bp overlap
Motif DE_72h DE_72h-ZNF16_MA1654.2 21 bp overlap
ZNF211 1 dataset
Motif DE_72h DE_72h-ZNF211_MA1974.2 10 bp overlap
ZNF449 1 dataset
Motif DE_72h DE_72h-ZNF449_MA1656.2 10 bp overlap
ZNF454 1 dataset
Motif DE_72h DE_72h-ZNF454_MA1712.2 17 bp overlap
ZNF93 1 dataset
Motif DE_72h DE_72h-ZNF93_MA1721.2 14 bp overlap
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