chr6 : 113,626,716 – 113,627,172
456 bp 62 TFs 1 linked gene
This 456 bp open chromatin element is linked to LINC02541 and is bound by 62 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02541 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:113,621,716 – 113,632,172
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP GSE80256.AR.LNCaP 145 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 66 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 151 bp overlap
ARID3A 1 dataset
ChIP GM12878 ENCSR725LYT.ARID3A.GM12878 195 bp overlap
BACH1 1 dataset
ChIP GM12878 ENCFF576UEQ 301 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 115 bp overlap
BCLAF1 1 dataset
ChIP GM12878 ENCFF306JRM 211 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 197 bp overlap
BHLHE40 5 datasets
ChIP GM12878 ENCFF010ZUU 148 bp overlap
ChIP GM12878 ENCFF521IZR 72 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 181 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 138 bp overlap
ChIP GM12878 ENCSR000DZJ.BHLHE40.GM12878 73 bp overlap
BRD4 5 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 319 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 99 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-075 212 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 98 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 456 bp overlap
CHD1 1 dataset
ChIP GM12878 ENCFF566UBH 400 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 75 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 204 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 243 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 63 bp overlap
CTCF 13 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 62 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 90 bp overlap
ChIP GM06990 ENCFF471OQT 126 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 124 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 60 bp overlap
ChIP HepG2 ENCFF194VBQ 147 bp overlap
ChIP HepG2 ENCFF757EKU 89 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 79 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 71 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 67 bp overlap
ChIP Peyer's patch ENCFF849HUG 65 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 77 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 51 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 132 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 165 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 231 bp overlap
EP300 1 dataset
ChIP GM12878 ENCFF039QRE 116 bp overlap
ETV6 1 dataset
ChIP GM12878 GSE97661.ETV6.GM12878 198 bp overlap
FOXA1 1 dataset
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 206 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 444 bp overlap
ChIP DE DE-FOXA2-2 394 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 185 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 361 bp overlap
ChIP DE DE-GATA4-2 274 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 313 bp overlap
ChIP DE DE-GATA6-2 249 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 122 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 293 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 319 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 115 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 331 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 411 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 438 bp overlap
ChIP GM12878 ENCFF824TGK 216 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCFF918AID 209 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 233 bp overlap
INTS13 1 dataset
ChIP monocyte GSE106359.INTS13.monocyte 71 bp overlap
IRF4 1 dataset
ChIP B-cell GSE142493.IRF4.B-cell 456 bp overlap
JUNB 1 dataset
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 98 bp overlap
MAX 2 datasets
ChIP P493-6 GSE36354.MAX.P493-6 57 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 124 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 289 bp overlap
MITF 1 dataset
ChIP 501-mel GSE61965.MITF.501-mel 94 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 232 bp overlap
MYC 2 datasets
ChIP P493-6 GSE77061.MYC.P493-6 193 bp overlap
ChIP Raji GSE30726.MYC.Raji 228 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 140 bp overlap
NCOR2 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.NCOR2.B-cell_GERMINAL_CENTER 93 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 278 bp overlap
PAX5 5 datasets
ChIP GM12878 ENCFF482PUW 123 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 136 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 135 bp overlap
ChIP GM12891 ENCSR000BJH.PAX5.GM12891 114 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 183 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 106 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 456 bp overlap
POLR2A 7 datasets
ChIP GM12878 ENCFF263VRI 311 bp overlap
ChIP GM12891 ENCFF012SUT 268 bp overlap
ChIP GM12891 ENCFF012SUT 456 bp overlap
ChIP GM12891 ENCFF379FCI 288 bp overlap
ChIP GM12891 ENCFF379FCI 456 bp overlap
ChIP GM18505 ENCFF311CYB 249 bp overlap
ChIP Raji ENCFF613VGX 456 bp overlap
POU2F2 1 dataset
ChIP GM12878 ENCFF207RKY 226 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 257 bp overlap
RAD21 10 datasets
ChIP GM12878 ENCFF046CBW 78 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 126 bp overlap
ChIP HCT116 ENCFF568PEO 83 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 51 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 76 bp overlap
ChIP Hep-G2 ERP000209.RAD21.Hep-G2 134 bp overlap
ChIP HepG2 ENCFF906QIS 64 bp overlap
ChIP MCF-7 ENCFF724VCQ 58 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 220 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 57 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 108 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 239 bp overlap
RELA 3 datasets
ChIP BJAB GSE117250.RELA.BJAB 183 bp overlap
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 174 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 96 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 269 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 176 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 250 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 232 bp overlap
SMC1A 2 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 75 bp overlap
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 87 bp overlap
SMC3 3 datasets
ChIP Hep-G2 ENCSR000EDW.SMC3.Hep-G2 73 bp overlap
ChIP HepG2 ENCFF745UAV 76 bp overlap
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 217 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 169 bp overlap
SPI1 1 dataset
ChIP GM12891 ENCFF563IUT 61 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 130 bp overlap
STAG1 1 dataset
ChIP HepG2 ENCFF843EBZ 93 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 200 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 74 bp overlap
USF2 1 dataset
ChIP GM12878 GSE97661.USF2.GM12878 158 bp overlap
YY1 1 dataset
ChIP GM12878 ENCFF908JTL 219 bp overlap
ZBTB4 1 dataset
ChIP GM12878 ENCFF811BTD 182 bp overlap
ZNF687 3 datasets
ChIP GM12878 ENCFF233SGE 244 bp overlap
ChIP GM12878 ENCFF233SGE 443 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 270 bp overlap
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