chr6 : 106,088,082 – 106,088,440
358 bp 62 TFs 1 linked gene
This 358 bp open chromatin element is linked to PRDM1 and is bound by 62 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRDM1 1.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:106,083,082 – 106,093,440
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 106 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 220 bp overlap
ARID4B 1 dataset
ChIP PC-3 GSE116669.ARID4B.PC-3 188 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 216 bp overlap
BRD2 4 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 358 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 176 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 358 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 251 bp overlap
BRD4 28 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 121 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 62 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 184 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 231 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 53 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 82 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 358 bp overlap
ChIP KK-1_DMSO GSE94732.BRD4.KK-1_DMSO 174 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 213 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 213 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 358 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 120 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 120 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 203 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 154 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 74 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 147 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 127 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 124 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 145 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 100 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 108 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 233 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 130 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 52 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 225 bp overlap
ChIP THP-1_iBET-BD1-PMA GSE138084.BRD4.THP-1_iBET-BD1-PMA 176 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 263 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 97 bp overlap
ChIP leiomyoma_PT967 GSE128230.CDK8.leiomyoma_PT967 85 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 183 bp overlap
CEBPB 2 datasets
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 115 bp overlap
ChIP HeLa-S3 ENCFF722WEG 136 bp overlap
CHD1 4 datasets
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 125 bp overlap
ChIP IMR-90 ENCFF921SVK 129 bp overlap
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 58 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 61 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 213 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 77 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 320 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 197 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 183 bp overlap
ESR1 2 datasets
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 177 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 174 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 213 bp overlap
EZH2 1 dataset
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 278 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 63 bp overlap
ChIP IMR-90 ENCFF179EDA 200 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 160 bp overlap
FOSL2 5 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 150 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 118 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 227 bp overlap
ChIP SK-N-SH ENCFF127ZDW 182 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 131 bp overlap
FOXA1 1 dataset
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 274 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 284 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 104 bp overlap
FOXP1 1 dataset
ChIP LNCaP GSE62492.FOXP1.LNCaP 147 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 241 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 298 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 76 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 251 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 164 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 126 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 358 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 191 bp overlap
ChIP HeLa-S3 ENCFF668QVP 87 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 155 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 269 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 145 bp overlap
JUND 4 datasets
ChIP SK-N-SH ENCFF551NEQ 177 bp overlap
ChIP SK-N-SH ENCFF971JKN 192 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 113 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 109 bp overlap
MED1 9 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 300 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 118 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 72 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 137 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 129 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 120 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 196 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 133 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 283 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 56 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 358 bp overlap
MYCN 1 dataset
ChIP MYCN-3_low GSE83317.MYCN.MYCN-3_low 90 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 169 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 157 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 93 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 176 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 235 bp overlap
POLR2A 1 dataset
ChIP esophagus squamous epithelium ENCFF708IOX 54 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 53 bp overlap
RAD21 11 datasets
ChIP IMR-90 ENCFF752PTH 145 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 171 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 213 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.RAD21.THP-1_PMA_Dex-6h 185 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 202 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 244 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 272 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 113 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 179 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.RAD21.THP-1_siCtrl-NS1-Pam3csk-4h 213 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.RAD21.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 153 bp overlap
RCOR1 2 datasets
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 184 bp overlap
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 120 bp overlap
RELA 6 datasets
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 132 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 150 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 81 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 171 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 183 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 232 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 229 bp overlap
SMAD3 2 datasets
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 197 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 291 bp overlap
SMARCA4 8 datasets
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 77 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 63 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 76 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 64 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 256 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 230 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 72 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 275 bp overlap
SMARCB1 1 dataset
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 169 bp overlap
SMARCC1 5 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 316 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 358 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 140 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 185 bp overlap
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 358 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 254 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 326 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 220 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 220 bp overlap
SPI1 1 dataset
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 291 bp overlap
SS18 4 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 358 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 287 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 51 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 209 bp overlap
SUZ12 1 dataset
ChIP H1 ENCFF881NFR 97 bp overlap
TAF1 2 datasets
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 62 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 52 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 214 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 98 bp overlap
ZNF384 1 dataset
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 55 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 351 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 174 bp overlap
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