chr1 : 113,223,494 – 113,224,107
613 bp 75 TFs 5 linked genes
This 613 bp open chromatin element is linked to 5 target genes and is bound by 75 transcription factors.
Linked Genes
5 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LRIG2 150.6 kb Distal Multiome
LRIG2-DT 150.7 kb Distal Multiome
MAGI3 166.7 kb Distal Multiome
SLC16A1-AS1 267.4 kb Distal Multiome
SLC16A1 267.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:113,218,494 – 113,229,107
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 180 bp overlap
ASCL1 2 datasets
Motif DE_48h DE_48h-ASCL1_MA1100.3 8 bp overlap
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
Ascl2 1 dataset
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 1 dataset
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 226 bp overlap
BRD2 1 dataset
ChIP K-562 GSE140325.BRD2.K-562 163 bp overlap
BRD4 4 datasets
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 226 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 213 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 281 bp overlap
ChIP hESC GSE33281.BRD4.hESC 95 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 200 bp overlap
CEBPA 10 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 304 bp overlap
ChIP HepG2 ENCFF175DFS 202 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 414 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 331 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 336 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 311 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 350 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 292 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 306 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 287 bp overlap
CEBPB 22 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 248 bp overlap
ChIP A549 ENCFF781RLJ 321 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 395 bp overlap
ChIP HeLa-S3 ENCFF722WEG 265 bp overlap
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 206 bp overlap
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 237 bp overlap
ChIP HepG2 ENCFF074JWB 201 bp overlap
ChIP HepG2 ENCFF536NTI 221 bp overlap
ChIP IMR-90 ENCFF468UGY 251 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 216 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 403 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 247 bp overlap
ChIP K562 ENCFF189VBN 230 bp overlap
ChIP K562 ENCFF194QGF 182 bp overlap
ChIP K562 ENCFF584CTB 396 bp overlap
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 219 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 420 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 220 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 149 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 149 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.CEBPB.monocyte_MACROPHAGE 150 bp overlap
CEBPD 4 datasets
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 200 bp overlap
ChIP Hep-G2 ENCSR000BQJ.CEBPD.Hep-G2 200 bp overlap
ChIP HepG2 ENCFF345JDB 305 bp overlap
ChIP K-562 ENCSR000BVY.CEBPD.K-562 129 bp overlap
CEBPG 2 datasets
ChIP HepG2 ENCFF503XBC 94 bp overlap
ChIP K562 ENCFF651CMK 401 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 308 bp overlap
ChIP BLaER1 ENCFF093OYK 445 bp overlap
ChIP BLaER1 ENCFF274GAT 438 bp overlap
E2F6 2 datasets
ChIP K-562 ENCSR000BLI.E2F6.K-562 139 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 143 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 252 bp overlap
ELF1 2 datasets
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 228 bp overlap
ChIP K562 ENCFF457KVR 84 bp overlap
EOMES 2 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 502 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 161 bp overlap
ETV6 1 dataset
ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 141 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 262 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 516 bp overlap
ChIP DE DE-FOXA2-2 261 bp overlap
ChIP DE DE-FOXA2-2 276 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 317 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 509 bp overlap
ChIP DE DE-GATA4-2 613 bp overlap
GATA6 10 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP DE DE-GATA6-1 524 bp overlap
ChIP DE DE-GATA6-2 613 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 469 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 468 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 412 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 613 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 530 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 537 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 485 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 125 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 157 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 245 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 454 bp overlap
MAX 3 datasets
ChIP Hep-G2 ENCSR000EDS.MAX.Hep-G2 114 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 109 bp overlap
ChIP K562 ENCFF524IJO 154 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
MYC 4 datasets
ChIP K-562 ENCSR000EGJ.MYC.K-562 182 bp overlap
ChIP K562 ENCFF988ZRU 373 bp overlap
ChIP NB69 GSE138295.MYC.NB69 233 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 248 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 197 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 224 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 106 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 255 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 356 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 170 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 197 bp overlap
MYOG 1 dataset
Motif DE_48h DE_48h-MYOG_MA0500.3 8 bp overlap
NFATC3 2 datasets
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
NFYB 1 dataset
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 154 bp overlap
NHLH1 1 dataset
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
NRF1 2 datasets
ChIP Hep-G2 ENCSR853ADA.NRF1.Hep-G2 234 bp overlap
ChIP HepG2 ENCFF694NVY 557 bp overlap
Neurod2 1 dataset
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 2 datasets
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Olig2 1 dataset
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 372 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 291 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 170 bp overlap
PRDM10 1 dataset
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 138 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 175 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 162 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 613 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 520 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 264 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 427 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 613 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 613 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 415 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 184 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 375 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 613 bp overlap
STAT1 1 dataset
ChIP THP-1_IFNb GSE128111.STAT1.THP-1_IFNb 166 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 182 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 278 bp overlap
TBR1 1 dataset
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBX5 1 dataset
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Tbx6 2 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Tcf12 1 dataset
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
USF1 4 datasets
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 102 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 152 bp overlap
ChIP K562 ENCFF202SFC 425 bp overlap
USF2 1 dataset
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 141 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 159 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 186 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 211 bp overlap
ZNF24 1 dataset
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
ZNF276 1 dataset
ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 204 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 87 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 145 bp overlap
ZNF572 1 dataset
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 214 bp overlap
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