chr6 : 89,668,262 – 89,668,525
263 bp 77 TFs 1 linked gene
This 263 bp open chromatin element is linked to MDN1 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MDN1 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:89,663,262 – 89,673,525
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 135 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 125 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 155 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
BHLHE23 1 dataset
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 263 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 263 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 197 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP adrenal-gland ENCSR408ZEE.CTCF.adrenal-gland 61 bp overlap
ChIP chondrocyte ENCFF134ORZ 155 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 137 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 165 bp overlap
EP300 4 datasets
ChIP Ishikawa ENCFF364ZWT 263 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 170 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 130 bp overlap
ChIP hESC GSE17917.EP300.hESC 181 bp overlap
ESR1 4 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 159 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 262 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 121 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 263 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 241 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 163 bp overlap
FLI1 6 datasets
ChIP A-673 GSE99959.FLI1.A-673 92 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 221 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 218 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 104 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 263 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 205 bp overlap
FOXA1 1 dataset
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 63 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 162 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 237 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 236 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 142 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 263 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 263 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 263 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 222 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 263 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
KLF4 1 dataset
ChIP WA09 GSE105028.KLF4.WA09 229 bp overlap
KMT2A 3 datasets
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 153 bp overlap
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 71 bp overlap
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 79 bp overlap
LEF1 1 dataset
ChIP hESC GSE64758.LEF1.hESC 148 bp overlap
MAX 3 datasets
ChIP Ishikawa ENCFF064TDQ 263 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 181 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 210 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 263 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 97 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 263 bp overlap
MXI1 2 datasets
ChIP H1 ENCFF963FZS 263 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 170 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 263 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 118 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 160 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 263 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 263 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 133 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 263 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 263 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 263 bp overlap
ChIP hESC GSE18292.NANOG.hESC 173 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 263 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 263 bp overlap
NEUROG1 1 dataset
Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 101 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 259 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 174 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 170 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 116 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 205 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 188 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 9 datasets
ChIP GM23338 ENCFF333SNB 215 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 263 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 182 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 263 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 247 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 204 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 147 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 263 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 127 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 263 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 242 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 263 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 221 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 197 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 155 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 222 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 197 bp overlap
SMAD2_3 4 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 121 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 194 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 180 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 223 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 198 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 105 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 111 bp overlap
SMARCA2 8 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 52 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 263 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 177 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 263 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 227 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 219 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 263 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 263 bp overlap
SMARCA4 11 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 132 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 183 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 225 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 263 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 263 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 263 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 224 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 224 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 113 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 205 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 263 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 209 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 263 bp overlap
SMARCC1 6 datasets
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 133 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 181 bp overlap
ChIP G-401_NoDox GSE71504.SMARCC1.G-401_NoDox 130 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 162 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 220 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 263 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 263 bp overlap
ChIP hESC GSE18292.SOX2.hESC 99 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 227 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 263 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 80 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 154 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 188 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 154 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 112 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 261 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 252 bp overlap
TEAD4 5 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 185 bp overlap
ChIP H1 ENCFF778PAX 174 bp overlap
ChIP Ishikawa ENCFF772OTG 226 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 203 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 247 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 205 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 110 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 208 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 139 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 149 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 160 bp overlap
ZZZ3 1 dataset
ChIP K-562 ENCSR780BBJ.ZZZ3.K-562 263 bp overlap
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