chr6 : 87,551,523 – 87,552,511
988 bp 64 TFs 5 linked genes
This 988 bp open chromatin element is linked to 5 target genes and is bound by 64 transcription factors.
Linked Genes
5 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RARS2 38.2 kb Distal Multiome
ORC3 38.3 kb Distal Multiome
SLC35A1 78.9 kb Distal Multiome
AKIRIN2 150.4 kb Distal Multiome
SMIM8 229.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:87,546,523 – 87,557,511
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 407 bp overlap
ChIP K562 ENCFF938UXQ 137 bp overlap
ARID3A 1 dataset
ChIP K-562 ENCSR000EFY.ARID3A.K-562 146 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 274 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 372 bp overlap
ChIP K562 ENCFF674KTF 235 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 71 bp overlap
BRD4 1 dataset
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 323 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 219 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CCNT2 3 datasets
ChIP K-562 ENCSR000DOA.CCNT2.K-562 169 bp overlap
ChIP K562 ENCFF199GSZ 425 bp overlap
ChIP K562 ENCFF199GSZ 425 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 131 bp overlap
CEBPB 2 datasets
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 137 bp overlap
ChIP K562 ENCFF194QGF 321 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 577 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 216 bp overlap
EP400 2 datasets
ChIP K-562 ENCSR817QKV.EP400.K-562 365 bp overlap
ChIP K562 ENCFF850OZQ 266 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 293 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 314 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-FOXA2-1 516 bp overlap
ChIP DE DE-FOXA2-2 355 bp overlap
Foxq1 1 dataset
Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap
GABPA 2 datasets
ChIP K562 ENCFF139LXS 751 bp overlap
ChIP K562 ENCFF139LXS 565 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 272 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 131 bp overlap
GATA2 1 dataset
ChIP K-562 ENCSR000DKA.GATA2.K-562 329 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 288 bp overlap
ChIP DE DE-GATA4-1 579 bp overlap
ChIP DE DE-GATA4-2 710 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 389 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 576 bp overlap
ChIP DE DE-GATA6-2 808 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 630 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 403 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 206 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 626 bp overlap
ChIP K562 ENCFF968WBH 521 bp overlap
HMBOX1 4 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 490 bp overlap
ChIP K562 ENCFF055GAZ 175 bp overlap
ChIP K562 ENCFF317JJX 170 bp overlap
ChIP K562 ENCFF317JJX 521 bp overlap
HOXC13 2 datasets
Motif DE_36h DE_36h-HOXC13_MA0907.2 9 bp overlap
Motif DE_48h DE_48h-HOXC13_MA0907.2 9 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 247 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 284 bp overlap
ChIP K562 ENCFF320EQC 601 bp overlap
MAX 3 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 296 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 168 bp overlap
ChIP K562 ENCFF110LJS 351 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 678 bp overlap
ChIP K562 ENCFF320GSD 255 bp overlap
MNT 3 datasets
ChIP K-562 ENCSR390VGH.MNT.K-562 248 bp overlap
ChIP K-562 ENCSR512NLO.MNT.K-562 202 bp overlap
ChIP K562 ENCFF820IGH 651 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 283 bp overlap
MYC 4 datasets
ChIP K-562 ENCSR000EGJ.MYC.K-562 389 bp overlap
ChIP K-562 ENCSR000FAG.MYC.K-562 184 bp overlap
ChIP K-562 ENCSR000EGJ.MYC.K-562 187 bp overlap
ChIP K562 ENCFF988ZRU 437 bp overlap
NR2C1 2 datasets
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_48h DE_48h-NR2F1_MA1538.1 15 bp overlap
NR5A1 1 dataset
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
Nr1H2 2 datasets
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 342 bp overlap
ChIP K562 ENCFF286KMN 253 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 733 bp overlap
ChIP K562 ENCFF236IUS 422 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 141 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 321 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 223 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 167 bp overlap
RORA 1 dataset
Motif DE_48h DE_48h-RORA_MA0072.2 11 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 114 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 552 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 363 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 725 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 612 bp overlap
SMAD3 1 dataset
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 119 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 411 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 326 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 269 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 367 bp overlap
SRF 2 datasets
ChIP K-562 ENCSR582IAO.SRF.K-562 185 bp overlap
ChIP K562 ENCFF766EOO 397 bp overlap
TAL1 3 datasets
ChIP K-562 GSE107726.TAL1.K-562 269 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 238 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 171 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 239 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 141 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 153 bp overlap
ZBTB40 2 datasets
ChIP K562 ENCFF337GJB 564 bp overlap
ChIP K562 ENCFF337GJB 591 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 638 bp overlap
ZNF135 2 datasets
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 182 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR117WTM.ZNF24.K-562 274 bp overlap
ZNF384 2 datasets
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 127 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 146 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 188 bp overlap
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