chr6 : 4,682,186 – 4,682,977
791 bp 88 TFs 1 linked gene
This 791 bp open chromatin element is linked to CDYL and is bound by 88 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CDYL 90.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:4,677,186 – 4,687,977
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 396 bp overlap
ChIP K562 ENCFF938UXQ 460 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 344 bp overlap
ChIP K562 ENCFF308SKS 418 bp overlap
CBFA2T3 1 dataset
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 251 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 169 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR620VIC.CEBPG.K-562 280 bp overlap
ChIP K562 ENCFF783ADE 561 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 399 bp overlap
ChIP K562 ENCFF403WPG 437 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 251 bp overlap
DMRTA2 1 dataset
Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 503 bp overlap
EOMES 2 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 247 bp overlap
ESRRA 2 datasets
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 300 bp overlap
ChIP K562 ENCFF968PEP 465 bp overlap
ETV1 2 datasets
ChIP K-562 ENCSR277DMR.ETV1.K-562 199 bp overlap
ChIP K562 ENCFF389WTI 361 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 545 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 391 bp overlap
ChIP DE DE-FOXA2-1 253 bp overlap
ChIP DE DE-FOXA2-2 460 bp overlap
ChIP DE DE-FOXA2-2 259 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF781VSC 341 bp overlap
FOXK2 3 datasets
ChIP K-562 ENCSR302AWT.FOXK2.K-562 172 bp overlap
ChIP K562 ENCFF245WKP 318 bp overlap
ChIP K562 ENCFF851PFH 290 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 196 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 216 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 61 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 321 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 564 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 791 bp overlap
ChIP DE DE-GATA4-2 791 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 399 bp overlap
ChIP DE DE-GATA6-2 791 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 362 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 267 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 791 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 278 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 371 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 791 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 791 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 754 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 780 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 325 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 430 bp overlap
HNRNPLL 1 dataset
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 187 bp overlap
HOXB13 1 dataset
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Hoxa13 1 dataset
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 457 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 425 bp overlap
ChIP K562 ENCFF348IBL 225 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 602 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF982GSZ 503 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 273 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 255 bp overlap
MTA3 3 datasets
ChIP K-562 ENCSR914NEI.MTA3.K-562 308 bp overlap
ChIP K-562 ENCSR180NCY.MTA3.K-562 307 bp overlap
ChIP K562 ENCFF289UFB 405 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NKX2-2 1 dataset
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 286 bp overlap
NRF1 9 datasets
ChIP K-562 ENCSR494TDU.NRF1.K-562 323 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 303 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 108 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 101 bp overlap
ChIP K-562_Ab_R157-1-3H1 GSE97661.NRF1.K-562_Ab_R157-1-3H1 78 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 117 bp overlap
ChIP K562 ENCFF130SGK 139 bp overlap
ChIP K562 ENCFF689EWI 301 bp overlap
ChIP K562 ENCFF791UHF 294 bp overlap
OLIG1 1 dataset
Motif DE_60h DE_60h-OLIG1_MA0826.1 10 bp overlap
OLIG2 1 dataset
Motif DE_60h DE_60h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif DE_60h DE_60h-OLIG3_MA0827.1 10 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 275 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 260 bp overlap
ChIP K562 ENCFF236IUS 422 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 140 bp overlap
REST 2 datasets
Motif DE_60h DE_60h-REST_MA0138.3 20 bp overlap
ChIP neural ENCSR000BTV.REST.neural 136 bp overlap
RREB1 1 dataset
ChIP K562 ENCFF796IEO 271 bp overlap
SIX2 1 dataset
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 142 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 791 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 539 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 359 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 709 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 356 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 606 bp overlap
ChIP K562 ENCFF506JCB 517 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 269 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 219 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 499 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 489 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 288 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 166 bp overlap
TAL1 4 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 387 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 204 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 136 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 296 bp overlap
TBR1 1 dataset
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 365 bp overlap
TRIM24 2 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 242 bp overlap
ChIP K562 ENCFF616RIL 297 bp overlap
TRIM28 1 dataset
ChIP K562 ENCFF172UPN 260 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 114 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 238 bp overlap
ZNF148 2 datasets
ChIP K562 ENCFF352SDL 551 bp overlap
ChIP K562 ENCFF352SDL 518 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 406 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 162 bp overlap
ChIP K562 ENCFF281INV 80 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 100 bp overlap
ZNF490 1 dataset
ChIP HEK293 GSE76494.ZNF490.HEK293 158 bp overlap
ZNF547 1 dataset
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
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