chr5 : 157,964,847 157,965,475
628 bp 76 TFs 2 linked genes
This 628 bp open chromatin element is linked to CLINT1 and THG1L and is bound by 76 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
CLINT1 105.9 kb Distal Multiome+HiCAR
THG1L 233.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:157,959,847 – 157,970,475
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 157 bp overlap
ARID1A 3 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 294 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 356 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 278 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 215 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 371 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BCL11A 1 dataset
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT848 GSE128230.CDK8.leiomyoma_PT848 73 bp overlap
ChIP leiomyoma_PT967 GSE128230.CDK8.leiomyoma_PT967 70 bp overlap
CEBPA 2 datasets
ChIP T-47D GSE132649.CEBPA.T-47D 95 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 88 bp overlap
CEBPB 2 datasets
ChIP Ishikawa ENCFF010USJ 66 bp overlap
ChIP K562 ENCFF189VBN 56 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR620VIC.CEBPG.K-562 53 bp overlap
ChIP K562 ENCFF783ADE 159 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 87 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 175 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 111 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 117 bp overlap
ChIP BLaER1 ENCFF858JKM 136 bp overlap
DPF2 2 datasets
ChIP MCF-7 ENCFF712EXQ 401 bp overlap
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 366 bp overlap
ESR1 5 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 123 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 232 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 232 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 202 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 110 bp overlap
Ebf2 1 dataset
Motif ES_0h ES_0h-Ebf2_MA1604.2 9 bp overlap
FOSL2 1 dataset
ChIP MCF-7_abemaciclib GSE157216.FOSL2.MCF-7_abemaciclib 157 bp overlap
FOXA1 18 datasets
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 202 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 367 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 56 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 242 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 247 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 254 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 73 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 201 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 224 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 88 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 253 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 222 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 134 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 225 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 270 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 198 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 247 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 327 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GRHL1 1 dataset
ChIP MCF-7 GSE140185.GRHL1.MCF-7 349 bp overlap
GRHL2 6 datasets
ChIP LNCaP GSE80256.GRHL2.LNCaP 356 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 349 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 450 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 328 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 365 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 395 bp overlap
Gfi1B 1 dataset
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 2 datasets
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 112 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 340 bp overlap
JUNB 1 dataset
ChIP MCF-7_abemaciclib GSE157218.JUNB.MCF-7_abemaciclib 210 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 156 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 133 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 136 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 68 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 51 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 74 bp overlap
MTA1 1 dataset
ChIP MCF-7 ENCSR348JOJ.MTA1.MCF-7 268 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 338 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 284 bp overlap
ChIP hESC GSE18292.NANOG.hESC 98 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 137 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 101 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 133 bp overlap
PKNOX1 2 datasets
ChIP MCF-7 ENCFF116OCS 411 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 348 bp overlap
POU2F1::SOX2 2 datasets
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 299 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 405 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 258 bp overlap
REST 1 dataset
ChIP GM23338 ENCSR871KYB.REST.GM23338 88 bp overlap
SIX1 1 dataset
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SMARCA4 4 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 394 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 178 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 194 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 199 bp overlap
SMARCB1 6 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 305 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 384 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 229 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 261 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 383 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 391 bp overlap
SMARCD3 2 datasets
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 364 bp overlap
ChIP MCF-7_KO GSE124225.SMARCD3.MCF-7_KO 61 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 238 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 225 bp overlap
STAT1 1 dataset
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 7 datasets
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 256 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 181 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 293 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 267 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 303 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 256 bp overlap
Six4 1 dataset
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Stat4 1 dataset
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
Stat5b 1 dataset
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TBP 2 datasets
ChIP hESC_2h GSE122298.TBP.hESC_2h 120 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 197 bp overlap
TEAD4 3 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 208 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 219 bp overlap
TFCP2 1 dataset
Motif ES_0h ES_0h-TFCP2_MA1968.2 9 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 222 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 94 bp overlap
YY1AP1 1 dataset
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 289 bp overlap
ZNF211 1 dataset
Motif ES_0h ES_0h-ZNF211_MA1974.2 10 bp overlap
ZNF263 1 dataset
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 64 bp overlap
ZNF675 1 dataset
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap