chr5 : 93,674,203 – 93,674,372
169 bp 78 TFs 1 linked gene
This 169 bp open chromatin element is linked to NPM1P27 and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NPM1P27 9.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:93,669,203 – 93,679,372
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 26 datasets
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 90 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 80 bp overlap
ChIP VCaP GSE148358.AR.VCaP 161 bp overlap
ChIP VCaP GSE32892.AR.VCaP 123 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 140 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 68 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 169 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 99 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 169 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 157 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 143 bp overlap
ChIP VCaP_R1881 GSE79128.AR.VCaP_R1881 88 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 86 bp overlap
ChIP VCaP_R1881_10C30 GSE32892.AR.VCaP_R1881_10C30 87 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 133 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 120 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 155 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 129 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 115 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 109 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 86 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 130 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 167 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 169 bp overlap
ChIP VCaP_siBCOR-EtOH GSE122572.AR.VCaP_siBCOR-EtOH 86 bp overlap
ChIP VCaP_siNON-EtOH GSE122572.AR.VCaP_siNON-EtOH 83 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 169 bp overlap
BCL11A 10 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 56 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 169 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 102 bp overlap
ChIP CD34_Day9_15min GSE104676.BCL11A.CD34_Day9_15min 84 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 158 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 75 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 97 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 169 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 169 bp overlap
ChIP HUDEP-2_BCL11A-ER-V5 GSE103445.BCL11A.HUDEP-2_BCL11A-ER-V5 134 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 157 bp overlap
BRD4 2 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 169 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 169 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 159 bp overlap
ChIP K562 ENCFF963TXY 169 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 169 bp overlap
ChIP K562 ENCFF673OEZ 86 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 139 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 169 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 169 bp overlap
CTCF 1 dataset
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 168 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 55 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 169 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 169 bp overlap
ERG 4 datasets
ChIP VCaP GSE49091.ERG.VCaP 164 bp overlap
ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 87 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 169 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 119 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 169 bp overlap
EZH2 1 dataset
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 120 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 160 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 84 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 169 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 169 bp overlap
ChIP DE DE-FOXA2-2 169 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 169 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 169 bp overlap
GABPA 2 datasets
ChIP VCaP GSE49091.GABPA.VCaP 128 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 169 bp overlap
GATA1 13 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 169 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 169 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 169 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 169 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 169 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 169 bp overlap
ChIP erythroblast ENCFF867JAR 169 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 169 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 169 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 169 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 169 bp overlap
ChIP erythroid_Don002 GSE137982.GATA1.erythroid_Don002 129 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 169 bp overlap
GATA2 10 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 169 bp overlap
ChIP ESF GSE108408.GATA2.ESF 131 bp overlap
ChIP SH-SY5Y ENCFF485YIB 169 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 169 bp overlap
ChIP SK-N-SH ENCFF764OZD 141 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 169 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 135 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 169 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 161 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 169 bp overlap
GATA3 10 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 169 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 169 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 169 bp overlap
ChIP MCF-7 ENCFF437NQS 169 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 140 bp overlap
ChIP SH-SY5Y ENCFF475HYF 169 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 169 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 149 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 169 bp overlap
ChIP SK-N-SH ENCFF040SSB 169 bp overlap
GATA4 9 datasets
ChIP DE DE-GATA4-1 169 bp overlap
ChIP DE DE-GATA4-2 169 bp overlap
ChIP G296S GSE85628.GATA4.G296S 136 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 136 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 169 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 169 bp overlap
ChIP foregut GSE117136.GATA4.foregut 169 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 169 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 169 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 169 bp overlap
ChIP DE DE-GATA6-2 169 bp overlap
ChIP H9 ERP004206.GATA6.H9 169 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 169 bp overlap
ChIP foregut GSE117136.GATA6.foregut 169 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 169 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 169 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 169 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 169 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 169 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 169 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 169 bp overlap
HDAC3 1 dataset
ChIP VCaP_DHAT_2H GSE28950.HDAC3.VCaP_DHAT_2H 129 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 169 bp overlap
KDM1A 4 datasets
ChIP K-562 GSE117944.KDM1A.K-562 136 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 114 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 75 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 169 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 169 bp overlap
MED1 2 datasets
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 169 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 128 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 165 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 124 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 169 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 150 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 169 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 158 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 148 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 77 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 169 bp overlap
NR2F2 2 datasets
ChIP MCF-7 ENCFF329FZB 169 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 169 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 50 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 92 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 169 bp overlap
PDX1 6 datasets
ChIP H9 ERP004206.PDX1.H9 115 bp overlap
ChIP hESC GSE58685.PDX1.hESC 156 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 169 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 169 bp overlap
ChIP islet ERP001456.PDX1.islet 90 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 169 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 169 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 66 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 169 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 60 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 169 bp overlap
POLR2A 1 dataset
ChIP erythroblast ENCFF498VMR 169 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 89 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 51 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 140 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 169 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 97 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 169 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCFF861MKH 169 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 169 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 169 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 169 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 89 bp overlap
SMARCA4 6 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 169 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 169 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 117 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 80 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 149 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 169 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 109 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 146 bp overlap
SP5_Zebrafish 1 dataset
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 147 bp overlap
TAL1 9 datasets
ChIP CD34 GSE52924.TAL1.CD34 169 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 169 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 121 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 169 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 169 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 169 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 169 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 169 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 169 bp overlap
TAL1_SCL 1 dataset
ChIP Jurkat GSE25000.TAL1_SCL.Jurkat 126 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 169 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 169 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 85 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 85 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 74 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 164 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 169 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 169 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 169 bp overlap
TCF4 1 dataset
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 169 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 142 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 142 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 161 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 101 bp overlap
TWIST1 6 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 163 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 169 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 162 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 162 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 169 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 163 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 121 bp overlap
ZBTB12 1 dataset
ChIP K-562 ENCSR172OSX.ZBTB12.K-562 169 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 169 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 169 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 76 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 169 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 169 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 169 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 150 bp overlap
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